NCBI C++ ToolKit
CBlastDbDataLoader Member List

This is the complete list of members for CBlastDbDataLoader, including all inherited members.

AddReference(void) constCObjectinline
CanBeDeleted(void) const THROWS_NONECObjectinline
CanGetBlobById() constCBlastDbDataLoadervirtual
CBlastDbDataLoader()CBlastDbDataLoaderinlineprotected
CBlastDbDataLoader(const string &loader_name, const SBlastDbParam &param)CBlastDbDataLoaderprotected
CBlastDbDataLoader(const CBlastDbDataLoader &)CBlastDbDataLoaderprotected
CDataLoader(void)CDataLoaderprotected
CDataLoader(const string &loader_name)CDataLoaderprotected
CDataLoader(const CDataLoader &)CDataLoaderprivate
CDebugDumpable(void)CDebugDumpableinline
CheckReferenceOverflow(TCount count) constCObjectprivate
ChoiceToDetails(EChoice choice) constCDataLoadervirtual
CObject(void)CObject
CObject(const CObject &src)CObject
CParamLoaderMaker< CBlastDbDataLoader, SBlastDbParam > classCBlastDbDataLoaderfriend
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCBlastDbDataLoadervirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DeleteThis(void)CObjectprotectedvirtual
DetailsToChoice(const SRequestDetails::TAnnotSet &annots) constCDataLoadervirtual
DetailsToChoice(const SRequestDetails &details) constCDataLoadervirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DropTSE(CRef< CTSE_Info > tse_info)CDataLoadervirtual
DumpToConsole(void) constCDebugDumpable
eAlign enum valueCDataLoader
eAll enum valueCDataLoader
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
eAnnot enum valueCDataLoader
eBioseq enum valueCDataLoader
eBioseqCore enum valueCDataLoader
eBlob enum valueCDataLoader
EChoice enum nameCDataLoader
eCore enum valueCDataLoader
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
EDbType enum nameCBlastDbDataLoader
eExtAlign enum valueCDataLoader
eExtAnnot enum valueCDataLoader
eExtFeatures enum valueCDataLoader
eExtGraph enum valueCDataLoader
eFeatures enum valueCDataLoader
eGraph enum valueCDataLoader
EnableDebugDump(bool on)CDebugDumpablestatic
eNucleotide enum valueCBlastDbDataLoader
eOrphanAnnot enum valueCDataLoader
eProtein enum valueCBlastDbDataLoader
eSequence enum valueCDataLoader
EstimateLoadBytes(const CTSE_Chunk_Info &chunk) constCDataLoadervirtual
EstimateLoadSeconds(const CTSE_Chunk_Info &chunk, Uint4 bytes) constCDataLoadervirtual
eUnknown enum valueCBlastDbDataLoader
GC(void)CDataLoadervirtual
GetAccVer(const CSeq_id_Handle &idh)CDataLoadervirtual
GetAccVerFound(const CSeq_id_Handle &idh)CDataLoadervirtual
GetAccVers(const TIds &ids, TLoaded &loaded, TIds &ret)CDataLoadervirtual
GetAllocFillMode(void)CObjectstatic
GetBlobById(const TBlobId &blob_id)CBlastDbDataLoadervirtual
GetBlobId(const CSeq_id_Handle &idh)CBlastDbDataLoadervirtual
GetBlobIdFromString(const string &str) constCDataLoadervirtual
GetBlobs(TTSE_LockSets &tse_sets)CDataLoadervirtual
GetBlobVersion(const TBlobId &id)CDataLoadervirtual
GetBulkIds(const TIds &ids, TLoaded &loaded, TBulkIds &ret)CDataLoadervirtual
GetCDDAnnots(const TSeqIdSets &id_sets, TLoaded &loaded, TCDD_Locks &ret)CDataLoadervirtual
GetChunk(TChunk chunk)CBlastDbDataLoadervirtual
GetChunks(const TChunkSet &chunks)CDataLoadervirtual
GetDataSource(void) constCDataLoaderprotected
GetDefaultBlobCacheSizeLimit() constCDataLoadervirtual
GetDefaultPriority(void) constCDataLoadervirtual
GetDetailedRecords(const CSeq_id_Handle &idh, const SRequestDetails &details)CDataLoadervirtual
GetEditSaver() constCDataLoadervirtual
GetExternalAnnotRecords(const CSeq_id_Handle &idh, const SAnnotSelector *sel)CDataLoadervirtual
GetExternalAnnotRecords(const CBioseq_Info &bioseq, const SAnnotSelector *sel)CDataLoadervirtual
GetExternalAnnotRecordsNA(const CSeq_id_Handle &idh, const SAnnotSelector *sel, TProcessedNAs *processed_nas)CDataLoadervirtual
GetExternalAnnotRecordsNA(const CBioseq_Info &bioseq, const SAnnotSelector *sel, TProcessedNAs *processed_nas)CDataLoadervirtual
GetExternalRecords(const CBioseq_Info &bioseq)CDataLoadervirtual
GetGi(const CSeq_id_Handle &idh)CDataLoadervirtual
GetGiFound(const CSeq_id_Handle &idh)CDataLoadervirtual
GetGis(const TIds &ids, TLoaded &loaded, TGis &ret)CDataLoadervirtual
GetIds(const CSeq_id_Handle &idh, TIds &ids)CDataLoadervirtual
GetLabel(const CSeq_id_Handle &idh)CDataLoadervirtual
GetLabels(const TIds &ids, TLoaded &loaded, TLabels &ret)CDataLoadervirtual
GetLoaderNameFromArgs(CConstRef< CSeqDB > db_handle)CBlastDbDataLoaderstatic
GetLoaderNameFromArgs(const SBlastDbParam &param)CBlastDbDataLoaderstatic
GetLoaderNameFromArgs(const string &dbname="nr", const EDbType dbtype=eUnknown)CBlastDbDataLoaderinlinestatic
GetName(void) constCDataLoader
GetOrphanAnnotRecords(const CSeq_id_Handle &idh, const SAnnotSelector *sel)CDataLoadervirtual
GetOrphanAnnotRecordsNA(const CSeq_id_Handle &idh, const SAnnotSelector *sel, TProcessedNAs *processed_nas)CDataLoadervirtual
GetOrphanAnnotRecordsNA(const TSeq_idSet &ids, const SAnnotSelector *sel, TProcessedNAs *processed_nas)CDataLoadervirtual
GetRecords(const CSeq_id_Handle &idh, EChoice choice)CBlastDbDataLoadervirtual
GetRecordsNoBlobState(const CSeq_id_Handle &idh, EChoice choice)CDataLoader
GetSequenceHash(const CSeq_id_Handle &idh)CDataLoadervirtual
GetSequenceHashes(const TIds &ids, TLoaded &loaded, TSequenceHashes &ret, THashKnown &known)CDataLoadervirtual
GetSequenceHashFound(const CSeq_id_Handle &idh)CDataLoadervirtual
GetSequenceLength(const CSeq_id_Handle &idh)CBlastDbDataLoadervirtual
GetSequenceLengths(const TIds &ids, TLoaded &loaded, TSequenceLengths &ret)CBlastDbDataLoadervirtual
CDataLoader::GetSequenceLengths(const TIds &ids, TLoaded &loaded, TSequenceLengths &ret)CDataLoadervirtual
GetSequenceState(const CSeq_id_Handle &idh)CDataLoadervirtual
GetSequenceStates(const TIds &ids, TLoaded &loaded, TSequenceStates &ret)CDataLoadervirtual
GetSequenceType(const CSeq_id_Handle &idh)CBlastDbDataLoadervirtual
GetSequenceTypeFound(const CSeq_id_Handle &idh)CDataLoadervirtual
GetSequenceTypes(const TIds &ids, TLoaded &loaded, TSequenceTypes &ret)CBlastDbDataLoadervirtual
CDataLoader::GetSequenceTypes(const TIds &ids, TLoaded &loaded, TSequenceTypes &ret)CDataLoadervirtual
GetTaxId(const CSeq_id_Handle &idh)CBlastDbDataLoadervirtual
GetTaxIds(const TIds &ids, TLoaded &loaded, TTaxIds &ret)CBlastDbDataLoadervirtual
CDataLoader::GetTaxIds(const TIds &ids, TLoaded &loaded, TTaxIds &ret)CDataLoadervirtual
GetTrackSplitSeq() constCDataLoadervirtual
InitCounter(void)CObjectinlineprivate
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
IsProcessedNA(const string &na, const TProcessedNAs *processed_nas)CDataLoaderstatic
IsRequestedAnyNA(const SAnnotSelector *sel)CDataLoaderstatic
IsRequestedNA(const string &na, const SAnnotSelector *sel)CDataLoaderstatic
m_BlastDbCBlastDbDataLoaderprotected
m_CounterCObjectmutableprivate
m_DataSourceCDataLoaderprivate
m_DBNameCBlastDbDataLoaderprotected
m_DBTypeCBlastDbDataLoaderprotected
m_IdsCBlastDbDataLoaderprotected
m_NameCDataLoaderprivate
m_UseFixedSizeSlicesCBlastDbDataLoaderprotected
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CBlastDbDataLoader &)CBlastDbDataLoaderprotected
CObject::operator=(const CObject &src) THROWS_NONECObjectinline
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
RegisterInObjectManager(CObjectManager &om, const string &dbname="nr", const EDbType dbtype=eUnknown, bool use_fixed_size_slices=true, CObjectManager::EIsDefault is_default=CObjectManager::eNonDefault, CObjectManager::TPriority priority=CObjectManager::kPriority_NotSet)CBlastDbDataLoaderstatic
RegisterInObjectManager(CObjectManager &om, CRef< CSeqDB > db_handle, bool use_fixed_size_slices=true, CObjectManager::EIsDefault is_default=CObjectManager::eNonDefault, CObjectManager::TPriority priority=CObjectManager::kPriority_NotSet)CBlastDbDataLoaderstatic
RegisterInObjectManager(CObjectManager &om, const string &dbname, const EDbType dbtype, CObjectManager::EIsDefault is_default, CObjectManager::TPriority priority=CObjectManager::kPriority_NotSet)CBlastDbDataLoaderstatic
RegisterInObjectManager(CObjectManager &om, CRef< CSeqDB > db_handle, CObjectManager::EIsDefault is_default=CObjectManager::eNonDefault, CObjectManager::TPriority priority=CObjectManager::kPriority_NotSet)CBlastDbDataLoaderstatic
CDataLoader::RegisterInObjectManager(CObjectManager &om, CLoaderMaker_Base &loader_maker, CObjectManager::EIsDefault is_default, CObjectManager::TPriority priority)CDataLoaderprotectedstatic
ReleaseReference(void) constCObject
RemoveLastReference(TCount count) constCObjectprivate
RemoveReference(void) constCObjectinline
ResolveConflict(const CSeq_id_Handle &id, const TTSE_LockSet &tse_set)CDataLoadervirtual
SequenceExists(const CSeq_id_Handle &idh)CDataLoader
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
SetName(const string &loader_name)CDataLoaderprotected
SetProcessedNA(const string &na, TProcessedNAs *processed_nas)CDataLoaderstatic
SetTargetDataSource(CDataSource &data_source)CDataLoader
sm_DumpEnabledCDebugDumpableprivatestatic
TBioseq_setId typedefCBlastDbDataLoaderprotected
TBioseqId typedefCBlastDbDataLoaderprotected
TBlobId typedefCDataLoader
TBlobVersion typedefCDataLoader
TBulkIds typedefCDataLoader
TCDD_Locks typedefCDataLoader
TChunk typedefCDataLoader
TChunkSet typedefCDataLoader
TCount typedefCObject
TCounter typedefCObject
TEditSaver typedefCDataLoader
TGis typedefCDataLoader
THashKnown typedefCDataLoader
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
TIdMap typedefCBlastDbDataLoader
TIds typedefCDataLoader
TLabels typedefCDataLoader
TLoaded typedefCDataLoader
TLockerType typedefCObject
TMaker typedefCBlastDbDataLoaderprotected
TPlace typedefCBlastDbDataLoaderprotected
TProcessedNAs typedefCDataLoader
TRegisterLoaderInfo typedefCBlastDbDataLoader
TSeq_idSet typedefCDataLoader
TSeqIdSets typedefCDataLoader
TSequenceHashes typedefCDataLoader
TSequenceLengths typedefCDataLoader
TSequenceStates typedefCDataLoader
TSequenceTypes typedefCDataLoader
TTaxIds typedefCDataLoader
TTSE_Lock typedefCDataLoader
TTSE_LockSet typedefCDataLoader
TTSE_LockSets typedefCDataLoader
x_GetOid(const CSeq_id_Handle &idh)CBlastDbDataLoaderprotected
x_GetOid(const TBlobId &blob_id) constCBlastDbDataLoaderprotected
x_LoadData(const CSeq_id_Handle &idh, int oid, CTSE_LoadLock &lock, int slice_size)CBlastDbDataLoaderprotected
~CBlastDbDataLoader()CBlastDbDataLoadervirtual
~CDataLoader(void)CDataLoadervirtual
~CDebugDumpable(void)CDebugDumpablevirtual
~CObject(void)CObjectvirtual
Modified on Thu Feb 22 17:08:08 2024 by modify_doxy.py rev. 669887