CHitMatrixDSBuilder Class Reference

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CHitMatrixDSBuilder. More...

#include <gui/widgets/hit_matrix/hit_matrix_ds_builder.hpp>

Collaboration diagram for CHitMatrixDSBuilder:

Public Types
typedef vector< CConstRef< objects::CSeq_annot > >	TAnnotVector
typedef vector< CConstRef< objects::CSeq_align > >	TAlignVector

Public Member Functions
	CHitMatrixDSBuilder ()
virtual	~CHitMatrixDSBuilder ()
void	Init (objects::CScope &scope, const objects::CSeq_align &align)
	initial data set from which an alignment will be build More...
void	Init (objects::CScope &scope, const objects::CSeq_annot &annot)
void	Init (objects::CScope &scope, const objects::CBioseq_Handle &handle)
void	Init (objects::CScope &scope, const objects::CBioseq &bioseq)
void	Init (objects::CScope &scope, TAlignVector &aligns)
void	Init (objects::CScope &scope, TAnnotVector &annots)
CIRef< IHitMatrixDataSource >	CreateDataSource ()

Protected Member Functions
void	x_Clear ()
void	x_TestAlignments ()
CIRef< IHitMatrixDataSource >	x_CreateDataSource ()

Protected Attributes
CRef< objects::CScope >	m_Scope
TAlignVector	m_OrigAligns

Detailed Description

CHitMatrixDSBuilder.

Definition at line 53 of file hit_matrix_ds_builder.hpp.

Member Typedef Documentation

TAlignVector

typedef vector< CConstRef<objects::CSeq_align> > CHitMatrixDSBuilder::TAlignVector

Definition at line 57 of file hit_matrix_ds_builder.hpp.

TAnnotVector

typedef vector< CConstRef<objects::CSeq_annot> > CHitMatrixDSBuilder::TAnnotVector

Definition at line 56 of file hit_matrix_ds_builder.hpp.

Constructor & Destructor Documentation

CHitMatrixDSBuilder()

CHitMatrixDSBuilder::CHitMatrixDSBuilder

(

)

Definition at line 54 of file hit_matrix_ds_builder.cpp.

~CHitMatrixDSBuilder()

CHitMatrixDSBuilder::~CHitMatrixDSBuilder ( )

virtual

Definition at line 59 of file hit_matrix_ds_builder.cpp.

References x_Clear().

Member Function Documentation

CreateDataSource()

CIRef< IHitMatrixDataSource > CHitMatrixDSBuilder::CreateDataSource

(

)

Definition at line 139 of file hit_matrix_ds_builder.cpp.

References CAlnUserOptions::eBothDirections, IHitMatrixDataSource::SParams::m_Direction, IHitMatrixDataSource::SParams::m_RowBased, and x_CreateDataSource().

Referenced by CCrossAlnDemoDlg::OnAccClick(), CHitMatrixDemoDlg::OnAccClick(), CCrossAlnDemoDlg::OnFileClick(), CHitMatrixDemoDlg::OnFileClick(), CDotMatrixView::x_InitWidget(), CCrossAlignView::x_PostAttachToProject(), and CBlastHitMatrix::x_PreProcess().

Init() [1/6]

void CHitMatrixDSBuilder::Init	(	objects::CScope &	scope,
		const objects::CBioseq &	bioseq
	)

Definition at line 83 of file hit_matrix_ds_builder.cpp.

References ExtractSeqAligns(), m_OrigAligns, m_Scope, CRef< C, Locker >::Reset(), and x_Clear().

Init() [2/6]

void CHitMatrixDSBuilder::Init	(	objects::CScope &	scope,
		const objects::CBioseq_Handle &	handle
	)

Definition at line 92 of file hit_matrix_ds_builder.cpp.

References CSeq_annot_Base::C_Data::e_Align, CSeqUtils::GetAnnotSelector(), m_OrigAligns, m_Scope, CRef< C, Locker >::Reset(), and x_Clear().

Init() [3/6]

void CHitMatrixDSBuilder::Init	(	objects::CScope &	scope,
		const objects::CSeq_align &	align
	)

initial data set from which an alignment will be build

Definition at line 65 of file hit_matrix_ds_builder.cpp.

References m_OrigAligns, m_Scope, CRef< C, Locker >::Reset(), and x_Clear().

Referenced by LoadObject(), CCrossAlnDemoDlg::OnAccClick(), CHitMatrixDemoDlg::OnAccClick(), CDotMatrixView::x_InitWidget(), CCrossAlignView::x_PostAttachToProject(), and CBlastHitMatrix::x_PreProcess().

Init() [4/6]

void CHitMatrixDSBuilder::Init	(	objects::CScope &	scope,
		const objects::CSeq_annot &	annot
	)

Definition at line 74 of file hit_matrix_ds_builder.cpp.

References ExtractSeqAligns(), m_OrigAligns, m_Scope, CRef< C, Locker >::Reset(), and x_Clear().

Init() [5/6]

void CHitMatrixDSBuilder::Init	(	objects::CScope &	scope,
		TAlignVector &	aligns
	)

Definition at line 106 of file hit_matrix_ds_builder.cpp.

References m_OrigAligns, m_Scope, CRef< C, Locker >::Reset(), and x_Clear().

Init() [6/6]

void CHitMatrixDSBuilder::Init	(	objects::CScope &	scope,
		TAnnotVector &	annots
	)

x_Clear()

void CHitMatrixDSBuilder::x_Clear ( void  )

protected

Definition at line 131 of file hit_matrix_ds_builder.cpp.

References m_OrigAligns, m_Scope, and CRef< C, Locker >::Reset().

Referenced by Init(), and ~CHitMatrixDSBuilder().

x_CreateDataSource()

CIRef< IHitMatrixDataSource > CHitMatrixDSBuilder::x_CreateDataSource ( )

protected

Definition at line 157 of file hit_matrix_ds_builder.cpp.

References m_OrigAligns, and m_Scope.

Referenced by CreateDataSource().

x_TestAlignments()

void CHitMatrixDSBuilder::x_TestAlignments ( )

protected

Member Data Documentation

m_OrigAligns

TAlignVector CHitMatrixDSBuilder::m_OrigAligns

protected

Definition at line 81 of file hit_matrix_ds_builder.hpp.

Referenced by Init(), x_Clear(), and x_CreateDataSource().

m_Scope

CRef<objects::CScope> CHitMatrixDSBuilder::m_Scope

protected

Definition at line 80 of file hit_matrix_ds_builder.hpp.

Referenced by Init(), x_Clear(), and x_CreateDataSource().

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The documentation for this class was generated from the following files:

• include/gui/widgets/hit_matrix/hit_matrix_ds_builder.hpp
• src/gui/widgets/hit_matrix/hit_matrix_ds_builder.cpp