NCBI C++ ToolKit
CRef_ext Member List

This is the complete list of members for CRef_ext, including all inherited members.

Add(const CSeq_loc &other)CSeq_loc
Add(const CSeq_loc &other, TOpFlags flags, ISynonymMapper *syn_mapper) constCSeq_loc
AddReference(void) constCObjectinline
Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)CSeq_locvirtual
begin(void) constCSeq_loc
CanBeDeleted(void) const THROWS_NONECObjectinline
CDebugDumpable(void)CDebugDumpableinline
ChangeToMix(void)CSeq_loc
ChangeToPackedInt(void)CSeq_loc
CheckId(const CSeq_id *&id, bool may_throw=true) constCSeq_locinline
CheckReferenceOverflow(TCount count) constCObjectprivate
CheckSelected(E_Choice index) constCSeq_loc_Baseinline
CObject(void)CObject
CObject(const CObject &src)CObject
Compare(const CSeq_loc &loc) constCSeq_loc
Compare(const CSeq_loc &loc, TCompareFlags flags) constCSeq_loc
CompareSubLoc(const CSeq_loc &loc, ENa_strand strand, const ISubLocFilter *filter=NULL) constCSeq_loc
const_iterator typedefCSeq_loc
CRef_ext(void)CRef_extinline
CRef_ext_Base(void)CRef_ext_Baseinline
CSeq_loc(void)CSeq_locinline
CSeq_loc(E_Choice index)CSeq_loc
CSeq_loc(TId &id, TPoint point, TStrand strand=eNa_strand_unknown)CSeq_loc
CSeq_loc(TId &id, const TPoints &points, TStrand strand=eNa_strand_unknown)CSeq_loc
CSeq_loc(TId &id, TPoint from, TPoint to, TStrand strand=eNa_strand_unknown)CSeq_loc
CSeq_loc(TId &id, TRanges ivals, TStrand strand=eNa_strand_unknown)CSeq_loc
CSeq_loc(const CSeq_loc &)CSeq_locprivate
CSeq_loc_Base(void)CSeq_loc_Base
CSeq_loc_Base(const CSeq_loc_Base &)CSeq_loc_Baseprivate
CSerialObject(void)CSerialObject
DebugDump(CDebugDumpContext ddc, unsigned int depth) constCSerialObjectvirtual
DebugDumpFormat(CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) constCDebugDumpable
DebugDumpText(ostream &out, const string &bundle, unsigned int depth) constCDebugDumpable
DECLARE_INTERNAL_TYPE_INFO()CRef_ext_Base
DeleteThis(void)CObjectprotectedvirtual
DoDeleteThisObject(void)CObjectvirtual
DoNotDeleteThisObject(void)CObjectvirtual
DoSelect(E_Choice index, CObjectMemoryPool *pool=0)CSeq_loc_Baseprivate
DumpToConsole(void) constCDebugDumpable
e_Bond enum valueCSeq_loc_Base
E_Choice enum nameCSeq_loc_Base
E_ChoiceStopper enum nameCSeq_loc_Base
e_Empty enum valueCSeq_loc_Base
e_Equiv enum valueCSeq_loc_Base
e_Feat enum valueCSeq_loc_Base
e_Int enum valueCSeq_loc_Base
e_MaxChoice enum valueCSeq_loc_Base
e_Mix enum valueCSeq_loc_Base
e_not_set enum valueCSeq_loc_Base
e_Null enum valueCSeq_loc_Base
e_Packed_int enum valueCSeq_loc_Base
e_Packed_pnt enum valueCSeq_loc_Base
e_Pnt enum valueCSeq_loc_Base
e_Whole enum valueCSeq_loc_Base
EAllocFillMode enum nameCObject
eAllocFillNone enum valueCObject
eAllocFillPattern enum valueCObject
eAllocFillZero enum valueCObject
ECompareFlags enum nameCSeq_loc
eCounterBitsCanBeDeletedCObjectstatic
eCounterBitsInPlainHeapCObjectstatic
eCounterBitsPlaceMaskCObjectstatic
eCounterStateMaskCObjectstatic
eCounterStepCObjectstatic
eCounterValidCObjectstatic
EnableDebugDump(bool on)CDebugDumpablestatic
end(void) constCSeq_loc
EOpFlags enum nameCSeq_loc
Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) constCSerialObjectvirtual
fCompare_Default enum valueCSeq_loc
fCompare_Strand enum valueCSeq_loc
FlipStrand(void)CSeq_loc
fMerge_Abutting enum valueCSeq_loc
fMerge_AbuttingOnly enum valueCSeq_loc
fMerge_All enum valueCSeq_loc
fMerge_Contained enum valueCSeq_loc
fMerge_Overlapping enum valueCSeq_loc
fMerge_OverlappingOnly enum valueCSeq_loc
fMerge_SingleRange enum valueCSeq_loc
fSort enum valueCSeq_loc
fSortAndMerge_All enum valueCSeq_loc
fStrand_Ignore enum valueCSeq_loc
Get(void) constCRef_ext_Baseinline
GetAllocFillMode(void)CObjectstatic
GetBond(void) constCSeq_loc_Base
GetCircularLength(TSeqPos seq_len) constCSeq_loc
GetEmpty(void) constCSeq_loc_Base
GetEquiv(void) constCSeq_loc_Base
GetFeat(void) constCSeq_loc_Base
GetId(void) constCSeq_locinline
GetInt(void) constCSeq_loc_Base
GetLabel(string *label) constCSeq_loc
GetMix(void) constCSeq_loc_Base
GetNamespaceName(void) constCSerialObject
GetNamespacePrefix(void) constCSerialObject
GetPacked_int(void) constCSeq_loc_Base
GetPacked_pnt(void) constCSeq_loc_Base
GetPnt(void) constCSeq_loc_Base
GetStart(ESeqLocExtremes ext) constCSeq_loc
GetStop(ESeqLocExtremes ext) constCSeq_loc
GetStrand(void) constCSeq_loc
GetThisTypeInfo(void) const =0CSerialObjectpure virtual
GetTotalRange(void) constCSeq_locinline
GetWhole(void) constCSeq_loc_Base
HasNamespaceName(void) constCSerialObject
HasNamespacePrefix(void) constCSerialObject
InitCounter(void)CObjectinlineprivate
Intersect(const CSeq_loc &other, TOpFlags flags, ISynonymMapper *syn_mapper) constCSeq_loc
InvalidateCache(void) constCSeq_locinline
InvalidateIdCache(void) constCSeq_locinline
InvalidateTotalRangeCache(void) constCSeq_locinline
InvalidObject(void) constCObjectprivate
IsAllocatedInPool(void) const THROWS_NONECObjectinline
IsBond(void) constCSeq_loc_Baseinline
IsEmpty(void) constCSeq_loc_Baseinline
IsEquiv(void) constCSeq_loc_Baseinline
IsFeat(void) constCSeq_loc_Baseinline
IsInt(void) constCSeq_loc_Baseinline
IsMix(void) constCSeq_loc_Baseinline
IsNull(void) constCSeq_loc_Baseinline
IsPacked_int(void) constCSeq_loc_Baseinline
IsPacked_pnt(void) constCSeq_loc_Baseinline
IsPartialStart(ESeqLocExtremes ext) constCSeq_loc
IsPartialStop(ESeqLocExtremes ext) constCSeq_loc
IsPnt(void) constCSeq_loc_Baseinline
IsReverseStrand(void) constCSeq_locinline
IsSetStrand(EIsSetStrand flag=eIsSetStrand_Any) constCSeq_loc
IsTruncatedStart(ESeqLocExtremes ext) constCSeq_loc
IsTruncatedStop(ESeqLocExtremes ext) constCSeq_loc
IsWhole(void) constCSeq_loc_Baseinline
kDirtyCache enum valueCSeq_locprivate
kSeveralIds enum valueCSeq_locprivate
m_choiceCSeq_loc_Baseprivate
m_CounterCObjectmutableprivate
m_IdCacheCSeq_locmutableprivate
m_objectCSeq_loc_Base
m_TotalRangeCacheFromCSeq_locmutableprivate
m_TotalRangeCacheToOpenCSeq_locmutableprivate
Merge(TOpFlags flags, ISynonymMapper *syn_mapper) constCSeq_loc
ms_UnassignedByteCSerialObjectstatic
ms_UnassignedStrCSerialObjectstatic
ObjectStateCanBeDeleted(TCount count)CObjectinlineprivatestatic
ObjectStateIsAllocatedInPool(TCount count)CObjectinlineprivatestatic
ObjectStateReferenced(TCount count)CObjectinlineprivatestatic
ObjectStateReferencedOnlyOnce(TCount count)CObjectinlineprivatestatic
ObjectStateUnreferenced(TCount count)CObjectinlineprivatestatic
ObjectStateValid(TCount count)CObjectinlineprivatestatic
operator delete(void *ptr)CObject
operator delete(void *ptr, void *place)CObject
operator delete(void *ptr, CObjectMemoryPool *place)CObject
operator delete[](void *ptr)CObject
operator new(size_t size)CObject
operator new(size_t size, void *place)CObject
operator new(size_t size, CObjectMemoryPool *place)CObject
operator new[](size_t size)CObject
operator=(const CSeq_loc &)CSeq_locprivate
CSerialObject::operator=(const CObject &src) THROWS_NONECObjectinline
PostRead(void) constCSeq_loc
Referenced(void) const THROWS_NONECObjectinline
ReferencedOnlyOnce(void) const THROWS_NONECObjectinline
ReleaseReference(void) constCObject
RemoveLastReference(TCount count) constCObjectprivate
RemoveReference(void) constCObjectinline
Reset(void)CSeq_loc_Basevirtual
ResetSelection(void)CSeq_loc_Basevirtual
ResetStrand(void)CSeq_loc
Select(E_Choice index, EResetVariant reset=eDoResetVariant)CSeq_loc_Base
Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)CSeq_loc_Base
SelectionName(E_Choice index)CSeq_loc_Basestatic
Set(void)CRef_ext_Baseinline
SetAllocFillMode(EAllocFillMode mode)CObjectstatic
SetAllocFillMode(const string &value)CObjectstatic
SetBond(TBond &v)CSeq_locinline
SetBond(void)CSeq_locinline
SetEmpty(TEmpty &v)CSeq_locinline
SetEmpty(void)CSeq_locinline
SetEquiv(TEquiv &v)CSeq_locinline
SetEquiv(void)CSeq_locinline
SetFeat(TFeat &v)CSeq_locinline
SetFeat(void)CSeq_locinline
SetId(CSeq_id &id)CSeq_loc
SetId(const CSeq_id &id)CSeq_locinline
SetInt(TInt &v)CSeq_locinline
SetInt(void)CSeq_locinline
SetMix(TMix &v)CSeq_locinline
SetMix(void)CSeq_locinline
SetNull(void)CSeq_locinline
SetPacked_int(TPacked_int &v)CSeq_locinline
SetPacked_int(void)CSeq_locinline
SetPacked_pnt(TPacked_pnt &v)CSeq_locinline
SetPacked_pnt(void)CSeq_locinline
SetPartialStart(bool val, ESeqLocExtremes ext)CSeq_loc
SetPartialStop(bool val, ESeqLocExtremes ext)CSeq_loc
SetPnt(TPnt &v)CSeq_locinline
SetPnt(void)CSeq_locinline
SetStrand(ENa_strand strand)CSeq_loc
SetTruncatedStart(bool val, ESeqLocExtremes ext)CSeq_loc
SetTruncatedStop(bool val, ESeqLocExtremes ext)CSeq_loc
SetVerifyDataGlobal(ESerialVerifyData verify)CSerialObjectstatic
SetVerifyDataThread(ESerialVerifyData verify)CSerialObjectstatic
SetWhole(TWhole &v)CSeq_locinline
SetWhole(void)CSeq_locinline
sm_DumpEnabledCDebugDumpableprivatestatic
sm_SelectionNamesCSeq_loc_Baseprivatestatic
Subtract(const CSeq_loc &other, TOpFlags flags, ISynonymMapper *syn_mapper, ILengthGetter *len_getter) constCSeq_loc
TBond typedefCSeq_loc_Base
TCompareFlags typedefCSeq_loc
TCount typedefCObject
TCounter typedefCObject
TEmpty typedefCSeq_loc_Base
TEquiv typedefCSeq_loc_Base
TFeat typedefCSeq_loc_Base
ThrowInvalidSelection(E_Choice index) constCSeq_loc_Base
ThrowNullPointerException(void)CObjectstatic
ThrowNullPointerException(const type_info &type)CObjectstatic
ThrowUnassigned(TMemberIndex index) constCSerialObject
ThrowUnassigned(TMemberIndex index, const char *file_name, int file_line) constCSerialObject
TId typedefCSeq_loc
TInt typedefCSeq_loc_Base
TIntervals typedefCSeq_loc
TLocations typedefCSeq_loc
TLockerType typedefCObject
TMix typedefCSeq_loc_Base
TOpFlags typedefCSeq_loc
TPacked_int typedefCSeq_loc_Base
TPacked_pnt typedefCSeq_loc_Base
Tparent typedefCRef_extprivate
TPnt typedefCSeq_loc_Base
TPoint typedefCSeq_loc
TPoints typedefCSeq_loc
TRange typedefCSeq_loc
TRanges typedefCSeq_loc
TStrand typedefCSeq_loc
TWhole typedefCSeq_loc_Base
UnassignedByte(void)CSerialObjectinlinestatic
UnassignedString(void)CSerialObjectinlinestatic
UnassignedStringUTF8(void)CSerialObjectinlinestatic
Which(void) constCSeq_loc_Baseinline
x_CalculateTotalRangeCheckId(const CSeq_id *&id) constCSeq_locprivate
x_ChangeToMix(const CSeq_loc &other)CSeq_locprivate
x_ChangeToPackedInt(const CSeq_interval &other)CSeq_locprivate
x_ChangeToPackedInt(const CSeq_loc &other)CSeq_locprivate
x_ChangeToPackedPnt(const CSeq_loc &other)CSeq_locprivate
x_CheckId(const CSeq_id *&id, bool may_throw=true) constCSeq_locprivate
x_CompareSingleId(const CSeq_loc &loc, const CSeq_id *id1, const CSeq_id *id2, TCompareFlags flags) constCSeq_locprivate
x_GetVerifyData(void)CSerialObjectprivatestatic
x_UpdateId(const CSeq_id *&total_id, const CSeq_id *id, bool may_throw=true) constCSeq_locprivate
x_UpdateTotalRange(void) constCSeq_locprivate
~CDebugDumpable(void)CDebugDumpablevirtual
~CObject(void)CObjectvirtual
~CSeq_loc(void)CSeq_locvirtual
~CSeq_loc_Base(void)CSeq_loc_Basevirtual
~CSerialObject(void)CSerialObjectvirtual
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Modified on Fri May 03 15:49:45 2024 by modify_doxy.py rev. 669887