#include "ftablock.h"
(Private to src/objtools/flatfile.)

Inheritance diagram for DataBlk:

Collaboration diagram for DataBlk:

Public Member Functions
	DataBlk (DataBlk parent=nullptr, int type_=0, char offset=nullptr, size_t len_=0)

	~DataBlk ()

void	SimpleDelete ()

Public Member Functions inherited from CFlatFileData
virtual	~CFlatFileData ()=default

Public Attributes
bool	mSimpleDelete = false

int	mType

CFlatFileData *	mpData

char *	mOffset

size_t	len

string	mpQscore

bool	mDrop

DataBlk *	mpNext

Detailed Description

Definition at line 292 of file ftablock.h.

Constructor & Destructor Documentation

◆ DataBlk()

DataBlk::DataBlk	(	DataBlk *	parent = `nullptr`,
		int	type_ = `0`,
		char *	offset = `nullptr`,
		size_t	len_ = `0`
	)

inline

Definition at line 296 of file ftablock.h.

References mpNext.

◆ ~DataBlk()

DataBlk::~DataBlk ( )

Definition at line 71 of file block.cpp.

References i, MemFree(), mOffset, mpData, mpNext, mpQscore, mSimpleDelete, mType, and ParFlat_ENTRYNODE.

Member Function Documentation

◆ SimpleDelete()

void DataBlk::SimpleDelete ( )

inline

Definition at line 320 of file ftablock.h.

Referenced by FreeFeatBlk(), fta_remove_dup_feats(), LoadFeat(), and XMLGetDescr().

Member Data Documentation

◆ len

◆ mDrop

bool DataBlk::mDrop

Definition at line 332 of file ftablock.h.

Referenced by fta_check_compare_qual(), LoadFeat(), ParseFeatureBlock(), and XMLParseFeatureBlock().

◆ mOffset

char* DataBlk::mOffset

Definition at line 329 of file ftablock.h.

Referenced by add_entry(), AddNIDSeqId(), AddToIndexBlk(), BuildFeatureBlock(), BuildSubBlock(), check_cds(), CheckOutsideEntry(), CollectGapFeats(), DefVsHTGKeywords(), embl_refs(), EmblGetDivision(), EmblGetDivisionNewID(), FakeEmblBioSources(), fta_check_mult_ids(), gb_refs_common(), GBDivOffset(), get_bioseq(), get_plasmid(), GetDataFromRN(), GetDescrEmblBlock(), GetDescrSPBlock(), GetEmblInst(), GetEmblInstContig(), GetEmblMolInfo(), GetEmblOrgRef(), GetEmblRefType(), GetFlatBiomol(), GetGBBlock(), GetGenBankDescr(), GetGenBankInst(), GetGenBankInstContig(), GetGenBankMolInfo(), GetGenBankRefType(), GetLenSubNode(), GetLineOSorOC(), GetSeqData(), GetSPGenome(), GetTaxIdFrom_OX(), GetViralHostsFrom_OH(), ImpFeatPub(), ind_subdbp(), LoadEntry(), LoadEntryGenbank(), LoadFeat(), make_entry(), ParseFeatureBlock(), SeqFeatPub(), SpPrepareEntry(), SprotRefString(), SrchNodeSubType(), SrchNodeType(), TrimEmblFeatBlk(), XMLAscii(), XMLBuildRefDataBlk(), XMLGetDescr(), XMLGetInst(), XMLGetInstContig(), XMLGetMolInfo(), XMLRefs(), xSrchNodeType(), and ~DataBlk().

◆ mpData

CFlatFileData* DataBlk::mpData

Definition at line 328 of file ftablock.h.

Referenced by BuildFeatureBlock(), BuildSubBlock(), check_cds(), CheckOutsideEntry(), CollectGapFeats(), CollectSourceFeats(), FakeEmblBioSources(), FreeFeatBlk(), fta_check_compare_qual(), fta_check_multiple_locus_tag(), fta_check_non_tpa_tsa_tls_locations(), fta_check_old_locus_tags(), fta_check_pseudogene_qual(), fta_check_replace_regulatory(), fta_remove_dup_feats(), get_bioseq(), get_plasmid(), GetEmblInst(), GetEmblSubBlock(), GetFlatBiomol(), GetGenBankInst(), GetLenSubNode(), GetOrganismFrom_OS_OC(), GetReleaseInfo(), GetSeqLen(), GetSPAnnot(), GetSPGenome(), GetSPInst(), GetTaxIdFrom_OX(), GetViralHostsFrom_OH(), ind_subdbp(), LoadEntry(), LoadFeat(), make_entry(), ParseFeatureBlock(), SeqFeatPub(), SortFeaturesByLoc(), SortFeaturesByOrder(), SPFeatProtRef(), SpPrepareEntry(), SprotAscii(), SprotRefString(), SrchNodeSubType(), TrackNodeType(), xFreeEntry(), XMLAscii(), XMLBuildRefDataBlk(), XMLLoadFeatBlk(), XMLParseFeatureBlock(), XMLRefs(), and ~DataBlk().

◆ mpNext

DataBlk* DataBlk::mpNext

Definition at line 333 of file ftablock.h.

Referenced by check_cds(), CollectGapFeats(), CollectSourceFeats(), DataBlk(), FakeEmblBioSources(), FreeFeatBlk(), fta_check_compare_qual(), fta_check_multiple_locus_tag(), fta_check_non_tpa_tsa_tls_locations(), fta_check_old_locus_tags(), fta_check_pseudogene_qual(), fta_check_replace_regulatory(), fta_remove_dup_feats(), fta_sort_features(), get_plasmid(), GetEmblDescr(), GetEmblSubBlock(), GetFlatBiomol(), GetGenBankDescr(), GetGenBankSubBlock(), GetLenSubNode(), GetOrganismFrom_OS_OC(), GetSPGenome(), GetSprotDescr(), GetSprotSubBlock(), GetTaxIdFrom_OX(), GetViralHostsFrom_OH(), ImpFeatPub(), ind_subdbp(), LoadEntry(), LoadEntryGenbank(), LoadFeat(), make_entry(), ParseFeatureBlock(), SeqFeatPub(), SprotRefString(), SrchNodeSubType(), TrackNodeType(), XMLBuildRefDataBlk(), XMLGetDescr(), XMLLoadFeatBlk(), XMLParseFeatureBlock(), and ~DataBlk().

◆ mpQscore

string DataBlk::mpQscore

Definition at line 331 of file ftablock.h.

Referenced by XMLAscii(), and ~DataBlk().

◆ mSimpleDelete

bool DataBlk::mSimpleDelete = false

Definition at line 319 of file ftablock.h.

Referenced by ~DataBlk().

◆ mType

int DataBlk::mType

The documentation for this class was generated from the following files:

src/objtools/flatfile/ftablock.h
src/objtools/flatfile/block.cpp

Public Member Functions

Public Attributes