tracker Class Reference

Search Toolkit Book for tracker

Collaboration diagram for tracker:

Classes
struct	result

Public Types
typedef dup_lookup_table::sample_loc	sample_loc

Public Member Functions
	tracker (const dup_lookup_table &the_table, const string &the_subject_id)
	~tracker ()
void	operator() (const string &index, Uint4 seqnum, string::size_type subject_offset, iterator start, iterator end)

Private Types
typedef dup_lookup_table::iterator	iterator
typedef vector< result >	result_list_type

Private Member Functions
void	report_match (Uint4 queryseq, Uint4 match_count, string::size_type s_off, string::size_type q_off)

Private Attributes
const dup_lookup_table &	table
const string &	subject_id
result_list_type	main_list
result_list_type	aux_list

Detailed Description

Definition at line 275 of file win_mask_dup_table.cpp.

Member Typedef Documentation

iterator

typedef dup_lookup_table::iterator tracker::iterator

private

Definition at line 287 of file win_mask_dup_table.cpp.

result_list_type

typedef vector< result > tracker::result_list_type

private

Definition at line 315 of file win_mask_dup_table.cpp.

sample_loc

typedef dup_lookup_table::sample_loc tracker::sample_loc

Definition at line 280 of file win_mask_dup_table.cpp.

Constructor & Destructor Documentation

tracker()

tracker::tracker ( const dup_lookup_table &  the_table, const string &  the_subject_id  )

inline

Definition at line 325 of file win_mask_dup_table.cpp.

~tracker()

tracker::~tracker

(

)

Definition at line 390 of file win_mask_dup_table.cpp.

References main_list, MIN_MATCH_COUNT, report_match(), and SAMPLE_SKIP.

Member Function Documentation

operator()()

void tracker::operator()	(	const string &	index,
		Uint4	seqnum,
		string::size_type	subject_offset,
		dup_lookup_table::iterator	iter,
		dup_lookup_table::iterator	end
	)

Definition at line 408 of file win_mask_dup_table.cpp.

References aux_list, main_list, MAX_OFFSET_ERROR, MIN_MATCH_COUNT, report_match(), result, and SAMPLE_SKIP.

report_match()

void tracker::report_match ( Uint4  queryseq, Uint4  match_count, string::size_type  s_off, string::size_type  q_off  )

private

Definition at line 374 of file win_mask_dup_table.cpp.

References LOG_POST, SAMPLE_SKIP, dup_lookup_table::seqid(), subject_id, table, and Warning().

Referenced by operator()(), and ~tracker().

Member Data Documentation

aux_list

result_list_type tracker::aux_list

private

Definition at line 370 of file win_mask_dup_table.cpp.

Referenced by operator()().

main_list

result_list_type tracker::main_list

private

Definition at line 369 of file win_mask_dup_table.cpp.

Referenced by operator()(), and ~tracker().

subject_id

const string& tracker::subject_id

private

Definition at line 353 of file win_mask_dup_table.cpp.

Referenced by report_match().

table

const dup_lookup_table& tracker::table

private

Definition at line 352 of file win_mask_dup_table.cpp.

Referenced by report_match().

---

The documentation for this class was generated from the following file:

• src/algo/winmask/win_mask_dup_table.cpp