feature_generator.hpp File Reference

#include <corelib/ncbistd.hpp>
#include <corelib/ncbiobj.hpp>
#include <algo/sequence/gene_model.hpp>
#include <objects/seq/MolInfo.hpp>
#include <objects/seqalign/Spliced_seg.hpp>
#include <objects/seqloc/Na_strand.hpp>
#include <objmgr/seq_loc_mapper.hpp>
#include <objmgr/mapped_feat.hpp>
#include <util/range_coll.hpp>

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Classes
struct	CFeatureGenerator::SImplementation
struct	CFeatureGenerator::SImplementation::SExon
struct	CFeatureGenerator::SImplementation::SMapper

Namespaces
	fg

Functions
	USING_SCOPE (objects)
CMappedFeat	GetCdsOnMrna (const objects::CSeq_id &rna_id, CScope &scope)
int	fg::GetGeneticCode (const CBioseq_Handle &bsh)

Function Documentation

GetCdsOnMrna()

CMappedFeat GetCdsOnMrna	(	const objects::CSeq_id &	rna_id,
		CScope &	scope
	)

Definition at line 1101 of file transform_align.cpp.

References CSeqFeatData::eSubtype_cdregion, CScope::GetBioseqHandle(), CSeq_loc::GetId(), CMappedFeat::GetLocation(), IsSameBioseq(), and NULL.

Referenced by CFeatureGenerator::SImplementation::GetCds(), CInternalStopFinder::GetCDSNucleotideSequence(), and CFeatureGenerator::SImplementation::StitchSmallHoles().

USING_SCOPE()

USING_SCOPE

(

objects

)