flatfile_parse_info.hpp File Reference

#include <list>
#include <optional>
#include <objects/seqset/Seq_entry.hpp>

Include dependency graph for flatfile_parse_info.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes
struct	FileBuf
struct	Parser
struct	Parser::SFindPubOptions

Typedefs
using	IndexblkPtr = Indexblk *
using	ProtBlkPtr = ProtBlk *
using	TEntryList = list< CRef< objects::CSeq_entry > >
using	ParserPtr = Parser *

Functions
void	fta_init_pp (Parser &pp)

Typedef Documentation

IndexblkPtr

using IndexblkPtr = Indexblk*

Definition at line 47 of file flatfile_parse_info.hpp.

ParserPtr

using ParserPtr = Parser*

Definition at line 244 of file flatfile_parse_info.hpp.

ProtBlkPtr

using ProtBlkPtr = ProtBlk*

Definition at line 48 of file flatfile_parse_info.hpp.

TEntryList

using TEntryList = list<CRef<objects::CSeq_entry> >

Definition at line 50 of file flatfile_parse_info.hpp.

Function Documentation

fta_init_pp()

void fta_init_pp

(

Parser &

pp

)

Definition at line 941 of file ftamain.cpp.

References Parser::accpref, Parser::accver, Parser::acprefix, Parser::all, Parser::allow_crossdb_featloc, Parser::citat, Parser::cleanup, Parser::convert, Parser::curindx, Parser::date, Parser::debug, CSeq_id_Base::e_not_set, Parser::entrez_fetch, Parser::entrylist, Parser::ff_get_entry, Parser::ff_get_entry_pp, Parser::ff_get_entry_v, Parser::ff_get_entry_v_pp, Parser::ff_get_qscore, Parser::ff_get_qscore_pp, Parser::ffdb, Parser::genenull, Parser::histacc, Parser::ign_bad_qs, Parser::ign_toks, Parser::indx, Parser::limit, Parser::medserver, Parser::mode, Parser::no_code, Parser::no_date, Parser::num_drop, Parser::pbp, Parser::qamode, Parser::qsfd, Parser::qsfile, Parser::Release, Parser::seg_acc, Parser::segment, Parser::seqtype, Parser::simple_genes, Parser::sort, Parser::sp_dt_seq_ver, Parser::taxserver, Parser::transl, and Parser::user_data.