#include <ncbi_pch.hpp>
#include "hitfilter_app.hpp"
#include <algo/align/util/hit_filter.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <objects/seqalign/Dense_seg.hpp>
#include <objects/seqalign/Score.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/general/Object_id.hpp>
#include <util/util_exception.hpp>
#include <serial/objistr.hpp>
#include <serial/serial.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/util/sequence.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>

Include dependency graph for hitfilter_app.cpp:

Go to the SVN repository for this file.

Functions
	USING_SCOPE (objects)

bool	s_PHitRefScore (const CAppHitFilter::THitRef &lhs, const CAppHitFilter::THitRef &rhs)

int	main (int argc, const char *argv[])

Variables
	USING_NCBI_SCOPE

Function Documentation

◆ main()

int main	(	int	argc,
		const char *	argv[]
	)

Definition at line 762 of file hitfilter_app.cpp.

References CNcbiApplicationAPI::AppMain().

◆ s_PHitRefScore()

bool s_PHitRefScore	(	const CAppHitFilter::THitRef &	lhs,
		const CAppHitFilter::THitRef &	rhs
	)

Definition at line 495 of file hitfilter_app.cpp.

Referenced by CAppHitFilter::x_DoMultiple(), and CAppHitFilter::x_DoPairwise().

◆ USING_SCOPE()

USING_SCOPE ( objects )

Variable Documentation

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 760 of file hitfilter_app.cpp.