NCBI C++ ToolKit
Classes | Functions
magicblast.cpp File Reference

Implementation of CMagicBlast. More...

#include <ncbi_pch.hpp>
#include <objects/general/User_object.hpp>
#include <algo/blast/core/spliced_hits.h>
#include <algo/blast/api/prelim_stage.hpp>
#include <algo/blast/api/blast_results.hpp>
#include <algo/blast/api/magicblast.hpp>
#include "blast_seqalign.hpp"
#include "blast_aux_priv.hpp"
#include "../core/jumper.h"
+ Include dependency graph for magicblast.cpp:

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Classes

struct  seq_align_pairs_first
 
struct  compare_alignments_fwrev_first
 
struct  compare_alignments_revfw_first
 

Functions

 USING_SCOPE (objects)
 
static void s_ComputeBtopAndIdentity (const HSPChain *chain, string &btop, string &md_tag, double &perc_id, bool btop_splice_signals)
 
static CRef< CSeq_aligns_CreateSeqAlign (const HSPChain *chain, CRef< ILocalQueryData > &qdata, CRef< IBlastSeqInfoSrc > &seqinfo_src, const BlastQueryInfo *query_info, bool btop_splice_signals)
 

Detailed Description

Implementation of CMagicBlast.

Definition in file magicblast.cpp.

Modified on Sun Apr 14 05:26:00 2024 by modify_doxy.py rev. 669887