Implementation of CMagicBlast. More...
#include <ncbi_pch.hpp>#include <objects/general/User_object.hpp>#include <algo/blast/core/spliced_hits.h>#include <algo/blast/api/prelim_stage.hpp>#include <algo/blast/api/blast_results.hpp>#include <algo/blast/api/magicblast.hpp>#include "blast_seqalign.hpp"#include "blast_aux_priv.hpp"#include "../core/jumper.h"
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Classes | |
| struct | seq_align_pairs_first |
| struct | compare_alignments_fwrev_first |
| struct | compare_alignments_revfw_first |
Functions | |
| USING_SCOPE (objects) | |
| static void | s_ComputeBtopAndIdentity (const HSPChain *chain, string &btop, string &md_tag, double &perc_id, bool btop_splice_signals) |
| static CRef< CSeq_align > | s_CreateSeqAlign (const HSPChain *chain, CRef< ILocalQueryData > &qdata, CRef< IBlastSeqInfoSrc > &seqinfo_src, const BlastQueryInfo *query_info, bool btop_splice_signals) |
Detailed Description
Implementation of CMagicBlast.
Definition in file magicblast.cpp.
