Genetic_code_table.cpp File Reference

#include <ncbi_pch.hpp>
#include <corelib/ncbimtx.hpp>
#include <serial/serial.hpp>
#include <serial/objistr.hpp>
#include <objects/seqfeat/Genetic_code_table.hpp>
#include "gc.inc"

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Classes
class	CGen_code_table_imp

Macros
#define	static
#define	s_GenCodeTblMemStr   CGen_code_table_imp::sm_GenCodeTblMemStr

Enumerations
enum	EBaseCode {   eBase_gap = 0 , eBase_A , eBase_C , eBase_M ,   eBase_G , eBase_R , eBase_S , eBase_V ,   eBase_T , eBase_W , eBase_Y , eBase_H ,   eBase_K , eBase_D , eBase_B , eBase_N ,   eBase_A = 1 , eBase_C , eBase_M , eBase_G ,   eBase_R , eBase_S , eBase_V , eBase_T ,   eBase_W , eBase_Y , eBase_H , eBase_K ,   eBase_D , eBase_B , eBase_N }

Functions
	DEFINE_STATIC_FAST_MUTEX (s_ImplementationMutex)
static bool	s_ValidCodon (const string &codon)

Macro Definition Documentation

s_GenCodeTblMemStr

#define s_GenCodeTblMemStr   CGen_code_table_imp::sm_GenCodeTblMemStr

Definition at line 682 of file Genetic_code_table.cpp.

static

#define static

Definition at line 681 of file Genetic_code_table.cpp.

Enumeration Type Documentation

EBaseCode

enum EBaseCode

Enumerator
eBase_gap
eBase_A
eBase_C
eBase_M
eBase_G
eBase_R
eBase_S
eBase_V
eBase_T
eBase_W
eBase_Y
eBase_H
eBase_K
eBase_D
eBase_B
eBase_N
eBase_A	A.
eBase_C	C.
eBase_M	AC.
eBase_G	G.
eBase_R	AG.
eBase_S	CG.
eBase_V	ACG.
eBase_T	T.
eBase_W	AT.
eBase_Y	CT.
eBase_H	ACT.
eBase_K	GT.
eBase_D	AGT.
eBase_B	CGT.
eBase_N	ACGT.

Definition at line 65 of file Genetic_code_table.cpp.

Function Documentation

DEFINE_STATIC_FAST_MUTEX()

DEFINE_STATIC_FAST_MUTEX

(

s_ImplementationMutex

)

Referenced by CGen_code_table_imp::GetTransTable().

s_ValidCodon()

static bool s_ValidCodon ( const string &  codon )

static

Definition at line 384 of file Genetic_code_table.cpp.

References i, and toupper().

Referenced by CGen_code_table::CodonToIndex().