#include <corelib/ncbistd.hpp>#include <corelib/ncbiobj.hpp>#include <util/align_range.hpp>#include <util/align_range_coll.hpp>#include <objtools/alnmgr/aln_seqid.hpp>
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Classes | |
| class | CPairwiseAln |
| A pairwise aln is a collection of ranges for a pair of rows. More... | |
| class | CPairwise_CI |
| CPairwiseAln iterator. Iterates over aligned ranges and gaps. More... | |
| class | CAnchoredAln |
| Query-anchored alignment can be 2 or multi-dimentional. More... | |
| struct | PScoreGreater< C > |
| Compare alignments by score. More... | |
Macros | |
| #define | USE_ALIGN_RANGE_LIST |
Typedefs | |
| typedef vector< CRef< CAnchoredAln > > | TAnchoredAlnVec |
| Collection of anchored alignments. More... | |
Functions | |
| USING_SCOPE (objects) | |
Macro Definition Documentation
◆ USE_ALIGN_RANGE_LIST
| #define USE_ALIGN_RANGE_LIST |
Definition at line 49 of file pairwise_aln.hpp.
Typedef Documentation
◆ TAnchoredAlnVec
| typedef vector< CRef<CAnchoredAln> > TAnchoredAlnVec |
Collection of anchored alignments.
- See also
- CreateAnchoredAlnVec
Definition at line 398 of file pairwise_aln.hpp.
Function Documentation
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
