NCBI C++ ToolKit
Classes | Macros | Typedefs | Functions
pairwise_aln.hpp File Reference
#include <corelib/ncbistd.hpp>
#include <corelib/ncbiobj.hpp>
#include <util/align_range.hpp>
#include <util/align_range_coll.hpp>
#include <objtools/alnmgr/aln_seqid.hpp>
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Classes

class  CPairwiseAln
 A pairwise aln is a collection of ranges for a pair of rows. More...
 
class  CPairwise_CI
 CPairwiseAln iterator. Iterates over aligned ranges and gaps. More...
 
class  CAnchoredAln
 Query-anchored alignment can be 2 or multi-dimentional. More...
 
struct  PScoreGreater< C >
 Compare alignments by score. More...
 

Macros

#define USE_ALIGN_RANGE_LIST
 

Typedefs

typedef vector< CRef< CAnchoredAln > > TAnchoredAlnVec
 Collection of anchored alignments. More...
 

Functions

 USING_SCOPE (objects)
 

Macro Definition Documentation

◆ USE_ALIGN_RANGE_LIST

#define USE_ALIGN_RANGE_LIST

Definition at line 49 of file pairwise_aln.hpp.

Typedef Documentation

◆ TAnchoredAlnVec

typedef vector< CRef<CAnchoredAln> > TAnchoredAlnVec

Collection of anchored alignments.

See also
CreateAnchoredAlnVec

Definition at line 398 of file pairwise_aln.hpp.

Function Documentation

◆ USING_SCOPE()

USING_SCOPE ( objects  )
Modified on Sun Jun 23 05:21:52 2024 by modify_doxy.py rev. 669887