NCBI C++ ToolKit
Functions
psiblast.cpp File Reference

Implementation of CPsiBlast. More...

#include <ncbi_pch.hpp>
#include <algo/blast/api/psiblast.hpp>
#include "psiblast_impl.hpp"
#include "psiblast_aux_priv.hpp"
#include <algo/blast/api/psiblast_options.hpp>
#include <algo/blast/api/psi_pssm_input.hpp>
#include <algo/blast/api/pssm_engine.hpp>
#include "bioseq_extract_data_priv.hpp"
#include <objects/scoremat/PssmWithParameters.hpp>
#include <objects/seq/Seq_descr.hpp>
+ Include dependency graph for psiblast.cpp:

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Functions

 USING_SCOPE (objects)
 
CRef< objects::CPssmWithParameters > PsiBlastComputePssmFromAlignment (const objects::CBioseq &query, CConstRef< objects::CSeq_align_set > alignment, CRef< objects::CScope > database_scope, const CPSIBlastOptionsHandle &opts_handle, CConstRef< CBlastAncillaryData > ancillary_data, PSIDiagnosticsRequest *diagnostics_req=0)
 Computes a PSSM from the result of a PSI-BLAST iteration. More...
 

Detailed Description

Implementation of CPsiBlast.

Definition in file psiblast.cpp.

Modified on Wed Apr 17 13:09:10 2024 by modify_doxy.py rev. 669887