Implementation of CPsiBlast. More...
#include <ncbi_pch.hpp>#include <algo/blast/api/psiblast.hpp>#include "psiblast_impl.hpp"#include "psiblast_aux_priv.hpp"#include <algo/blast/api/psiblast_options.hpp>#include <algo/blast/api/psi_pssm_input.hpp>#include <algo/blast/api/pssm_engine.hpp>#include "bioseq_extract_data_priv.hpp"#include <objects/scoremat/PssmWithParameters.hpp>#include <objects/seq/Seq_descr.hpp>
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Functions | |
| USING_SCOPE (objects) | |
| CRef< objects::CPssmWithParameters > | PsiBlastComputePssmFromAlignment (const objects::CBioseq &query, CConstRef< objects::CSeq_align_set > alignment, CRef< objects::CScope > database_scope, const CPSIBlastOptionsHandle &opts_handle, CConstRef< CBlastAncillaryData > ancillary_data, PSIDiagnosticsRequest *diagnostics_req=0) |
| Computes a PSSM from the result of a PSI-BLAST iteration. More... | |
Detailed Description
Implementation of CPsiBlast.
Definition in file psiblast.cpp.
