PSIDiagnosticsRequest Struct Reference

Search Toolkit Book for PSIDiagnosticsRequest

Structure to allow requesting various diagnostics data to be collected by PSSM engine. More...

#include <algo/blast/core/blast_psi.h>

Public Attributes
Boolean	information_content
	request information content More...
Boolean	residue_frequencies
	request observed residue frequencies More...
Boolean	weighted_residue_frequencies
	request observed weighted residue frequencies More...
Boolean	frequency_ratios
	request frequency ratios More...
Boolean	gapless_column_weights
	request gapless column weights More...
Boolean	sigma
	request sigma More...
Boolean	interval_sizes
	request interval sizes More...
Boolean	num_matching_seqs
	request number of matching sequences More...
Boolean	independent_observations
	request number of independent observations More...

Detailed Description

Structure to allow requesting various diagnostics data to be collected by PSSM engine.

Definition at line 181 of file blast_psi.h.

Member Data Documentation

frequency_ratios

Boolean PSIDiagnosticsRequest::frequency_ratios

request frequency ratios

Definition at line 187 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), CdPssmInput::CdPssmInput(), CPSIDiagnosticsRequest::DebugDump(), PSIDiagnosticsRequestNewEx(), PSIDiagnosticsResponseNew(), SU_PSSMInput::SU_PSSMInput(), and CPsiBlastTestFixture::x_ComputePssmForNextIteration().

gapless_column_weights

Boolean PSIDiagnosticsRequest::gapless_column_weights

request gapless column weights

Definition at line 188 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), CdPssmInput::CdPssmInput(), CPSIDiagnosticsRequest::DebugDump(), PSIDiagnosticsRequestNewEx(), PSIDiagnosticsResponseNew(), and SU_PSSMInput::SU_PSSMInput().

independent_observations

Boolean PSIDiagnosticsRequest::independent_observations

request number of independent observations

Definition at line 194 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), CdPssmInput::CdPssmInput(), and PSIDiagnosticsResponseNew().

information_content

Boolean PSIDiagnosticsRequest::information_content

request information content

Definition at line 182 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), CdPssmInput::CdPssmInput(), CPSIDiagnosticsRequest::DebugDump(), PSIDiagnosticsRequestNewEx(), PSIDiagnosticsResponseNew(), and SU_PSSMInput::SU_PSSMInput().

interval_sizes

Boolean PSIDiagnosticsRequest::interval_sizes

request interval sizes

Definition at line 191 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), PSIDiagnosticsRequestNewEx(), and PSIDiagnosticsResponseNew().

num_matching_seqs

Boolean PSIDiagnosticsRequest::num_matching_seqs

request number of matching sequences

Definition at line 192 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), PSIDiagnosticsRequestNewEx(), and PSIDiagnosticsResponseNew().

residue_frequencies

Boolean PSIDiagnosticsRequest::residue_frequencies

request observed residue frequencies

Definition at line 183 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), CdPssmInput::CdPssmInput(), CPSIDiagnosticsRequest::DebugDump(), PSIDiagnosticsResponseNew(), and SU_PSSMInput::SU_PSSMInput().

sigma

Boolean PSIDiagnosticsRequest::sigma

request sigma

Definition at line 190 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), PSIDiagnosticsRequestNewEx(), and PSIDiagnosticsResponseNew().

weighted_residue_frequencies

Boolean PSIDiagnosticsRequest::weighted_residue_frequencies

request observed weighted residue frequencies

Definition at line 185 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), CdPssmInput::CdPssmInput(), CPSIDiagnosticsRequest::DebugDump(), PSIDiagnosticsRequestNewEx(), PSIDiagnosticsResponseNew(), and SU_PSSMInput::SU_PSSMInput().

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The documentation for this struct was generated from the following file:

• include/algo/blast/core/blast_psi.h