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CMultiAligner::SColumn Struct Reference

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Column in an alignment used for combining result from multiple alignment and pair-wise in-cluster alignments. More...

+ Collaboration diagram for CMultiAligner::SColumn:

Public Member Functions

 SColumn (void)
 

Public Attributes

bool insert
 Is the column an insertion from in-cluster alignment. More...
 
vector< intletters
 Indices of letters in this column for regular column: index of a letter in input sequence (n-th letter) for inserted column: index of a letter in in-cluster alignment. More...
 
int number
 number of letters in range (inserted column only) More...
 
int cluster
 cluster index (inserted column only) More...
 

Detailed Description

Column in an alignment used for combining result from multiple alignment and pair-wise in-cluster alignments.

Definition at line 531 of file cobalt.hpp.

Constructor & Destructor Documentation

◆ SColumn()

CMultiAligner::SColumn::SColumn ( void  )
inline

Definition at line 547 of file cobalt.hpp.

Member Data Documentation

◆ cluster

int CMultiAligner::SColumn::cluster

cluster index (inserted column only)

Definition at line 545 of file cobalt.hpp.

◆ insert

bool CMultiAligner::SColumn::insert

Is the column an insertion from in-cluster alignment.

Definition at line 533 of file cobalt.hpp.

◆ letters

vector<int> CMultiAligner::SColumn::letters

Indices of letters in this column for regular column: index of a letter in input sequence (n-th letter) for inserted column: index of a letter in in-cluster alignment.

Definition at line 539 of file cobalt.hpp.

◆ number

int CMultiAligner::SColumn::number

number of letters in range (inserted column only)

Definition at line 542 of file cobalt.hpp.


The documentation for this struct was generated from the following file:
Modified on Sun Feb 25 03:01:56 2024 by modify_doxy.py rev. 669887