Search Toolkit Book for LinkedHSP
linked list of HSPs used to store hsps in culling tree. More...
Collaboration diagram for LinkedHSP:
Public Attributes | |
| BlastHSP * | hsp |
| Int4 | cid |
| Int4 | sid |
| Int4 | begin |
| Int4 | end |
| Int4 | merit |
| struct LinkedHSP * | next |
Detailed Description
linked list of HSPs used to store hsps in culling tree.
Definition at line 52 of file hspfilter_culling.c.
Member Data Documentation
◆ begin
| Int4 LinkedHSP::begin |
Definition at line 56 of file hspfilter_culling.c.
Referenced by s_DominateTest(), s_ForkChildren(), and s_ProcessCTree().
◆ cid
| Int4 LinkedHSP::cid |
Definition at line 54 of file hspfilter_culling.c.
◆ end
| Int4 LinkedHSP::end |
Definition at line 57 of file hspfilter_culling.c.
Referenced by s_DominateTest(), s_ForkChildren(), and s_ProcessCTree().
◆ hsp
| BlastHSP* LinkedHSP::hsp |
Definition at line 53 of file hspfilter_culling.c.
Referenced by s_BlastHSPCullingFinal(), s_DominateTest(), and s_HSPFree().
◆ merit
| Int4 LinkedHSP::merit |
Definition at line 58 of file hspfilter_culling.c.
Referenced by s_FullPass().
◆ next
| struct LinkedHSP* LinkedHSP::next |
Definition at line 59 of file hspfilter_culling.c.
Referenced by s_AddHSPtoList(), s_BlastHSPCullingFinal(), s_ForkChildren(), s_FullPass(), s_MarkDownHSPList(), s_ProcessHSPList(), and s_RipHSPOffCTree().
◆ sid
| Int4 LinkedHSP::sid |
Definition at line 55 of file hspfilter_culling.c.
Referenced by s_BlastHSPCullingFinal(), and s_DominateTest().
The documentation for this struct was generated from the following file:
- src/algo/blast/core/hspfilter_culling.c
