Search Toolkit Book for SComparison
Collaboration diagram for SComparison:
Public Member Functions | |
| SComparison () | |
| SComparison (const CAlignCompare::SAlignment &first, const CAlignCompare::SAlignment &second, double real_score_tolerance) | |
Public Attributes | |
| size_t | spans_in_common |
| size_t | spans_overlap |
| Int8 | spans_unique_first |
| Int8 | spans_unique_second |
| bool | is_equivalent |
| float | overlap |
Detailed Description
Definition at line 524 of file align_compare.cpp.
Constructor & Destructor Documentation
◆ SComparison() [1/2]
| SComparison::SComparison | ( | ) |
Definition at line 540 of file align_compare.cpp.
◆ SComparison() [2/2]
| SComparison::SComparison | ( | const CAlignCompare::SAlignment & | first, |
| const CAlignCompare::SAlignment & | second, | ||
| double | real_score_tolerance | ||
| ) |
Definition at line 550 of file align_compare.cpp.
References map_checker< Container >::begin(), map_checker< Container >::end(), CAlignCompare::SAlignment::exts, first(), CAlignCompare::SAlignment::integer_scores, is_equivalent, CAlignCompare::SAlignment::length, overlap, CAlignCompare::SAlignment::query_mismatches, r(), CAlignCompare::SAlignment::real_scores, s_EquivalentExts(), s_EquivalentScores(), CAlignCompare::SAlignment::spans, spans_in_common, spans_overlap, spans_unique_first, spans_unique_second, and CAlignCompare::SAlignment::subject_mismatches.
Member Data Documentation
◆ is_equivalent
| bool SComparison::is_equivalent |
Definition at line 536 of file align_compare.cpp.
Referenced by CAlignCompare::NextGroup(), and SComparison().
◆ overlap
| float SComparison::overlap |
Definition at line 537 of file align_compare.cpp.
Referenced by SComparison().
◆ spans_in_common
| size_t SComparison::spans_in_common |
Definition at line 532 of file align_compare.cpp.
Referenced by SComparison().
◆ spans_overlap
| size_t SComparison::spans_overlap |
Definition at line 533 of file align_compare.cpp.
Referenced by SComparison().
◆ spans_unique_first
| Int8 SComparison::spans_unique_first |
Definition at line 534 of file align_compare.cpp.
Referenced by SComparison().
◆ spans_unique_second
| Int8 SComparison::spans_unique_second |
Definition at line 535 of file align_compare.cpp.
Referenced by SComparison().
The documentation for this struct was generated from the following file:
- src/algo/align/util/align_compare.cpp
