#include <corelib/ncbistd.hpp>#include <objects/seq/Seq_annot.hpp>#include <objects/seq/Annotdesc.hpp>#include <objtools/readers/reader_base.hpp>#include <objtools/readers/message_listener.hpp>
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Classes | |
| class | CVcfInfoSpec |
| class | CVcfFilterSpec |
| class | CVcfFormatSpec |
| class | CVcfReader |
Enumerations | |
| enum | ESpecType { eType_Integer , eType_Float , eType_Flag , eType_Character , eType_String } |
| enum | ESpecNumber { eNumber_CountAlleles = -1 , eNumber_CountGenotypes = -2 , eNumber_CountUnknown = -3 , eNumber_CountAllAlleles = -4 } |
Functions | |
| ESpecType | SpecType (const string &) |
| ESpecNumber | SpecNumber (const string &) |
Enumeration Type Documentation
◆ ESpecNumber
| enum ESpecNumber |
| Enumerator | |
|---|---|
| eNumber_CountAlleles | |
| eNumber_CountGenotypes | |
| eNumber_CountUnknown | |
| eNumber_CountAllAlleles | |
Definition at line 64 of file vcf_reader.hpp.
◆ ESpecType
| enum ESpecType |
| Enumerator | |
|---|---|
| eType_Integer | |
| eType_Float | |
| eType_Flag | |
| eType_Character | |
| eType_String | |
Definition at line 52 of file vcf_reader.hpp.
Function Documentation
◆ SpecNumber()
| ESpecNumber SpecNumber | ( | const string & | specnumber | ) |
Definition at line 129 of file vcf_reader.cpp.
References CObjReaderLineException::Create(), eDiag_Warning, eNumber_CountAllAlleles, eNumber_CountAlleles, eNumber_CountGenotypes, eNumber_CountUnknown, ILineError::eProblem_GeneralParsingError, and NStr::StringToInt().
◆ SpecType()
Definition at line 101 of file vcf_reader.cpp.
References CObjReaderLineException::Create(), eDiag_Warning, map_checker< Container >::empty(), ILineError::eProblem_GeneralParsingError, eType_Character, eType_Flag, eType_Float, eType_Integer, and eType_String.
