Conserved Protein Domain Family
Ig6_L1-CAM_like

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cd05733: Ig6_L1-CAM_like (this model, PSSM-Id:143210 is obsolete and has been replaced by 409396)
Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Statistics
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PSSM-Id: 143210
Aligned: 11 rows
Threshold Bit Score: 130.965
Created: 17-Aug-2007
Updated: 17-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P35331         59 IVIQCEAKGKPpPSFSWTRNGTHFDIDKDAQVTMKPn--SGTLVVNIMngvkaeAYEGVYQCTARNERGAAISNNIVIR 135  chicken
NP_001085487   53 IVIQCEAKGKPpPSFSWTRNGTHFDIDKDPYVTMKPn--SGTLVINTMngarvdAYEGEYQCTARNDRGSALSNNIVIR 129  African clawed...
AAH55495       51 IVIYCEAKGKPhPSFSWTRNGTHFDIEKDPKVIMKPh--TGTLVIDISggekteAYEGVYQCAAHNQLGTAVSSHIHIR 127  zebrafish
XP_414434      53 FTIKCEASGNPqPTFNWTKDGKPFDLLSDPRIISRNn--SGTFVIQNHgi--itNFQGKYRCYASNVLGTAMSKEIELI 127  chicken
P11627         53 ISLKCEARGRPqVEFRWTKDGIHFKPKEELGVVVHEapySGSFTIEGNnsf-aqRFQGIYRCYASNKLGTAMSHEIQLV 130  house mouse
AAH73282       32 IVLKCEAKRNAkVKYTWKKDGETFAPEDGPSVNRKKd--SGSIIISNGngnamkDFQGKYRCYATNELGTAISHEIHVI 108  African clawed...
NP_571436      69 ITLTCDATGNPpPTFRWVKDGVEFDPSKDPDLSVSRd--SGTFSLTAKdgp-ihQYQGRYNCYASNELGTAVSNEARIV 144  zebrafish
CAM60068       60 IIIECEAKGNPvPTFQWRRNGKFFNVGKDPRVTMRSr--SGTLEIRSSgk--peDYEGEYQCFASNNLGTAISNKILLR 134  zebrafish
O42414         60 IFIECEAKGNPvPTFSWTRNGKFFNVAKDPKVSMRRr--SGTLVIDFHgggrpdDYEGEYQCFARNDYGTALSSKIHLQ 136  chicken
O94856         59 ILIECEAKGNPaPSFHWTRNSRFFNIAKDPRVSMRRr--SGTLVIDFRsggrpeEYEGEYQCFARNKFGTALSNRIRLQ 135  human
CAA04507       59 IVIQCEAKGKPpPSFSWTRNGTHFDIDKDPLVTMKPg--TGTLIINIMsegkaeTYEGVYQCTARNERGAAVSNNIVVR 135  human
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