Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Danio rerio)

Danio rerio

Taxonomy ID: 7955 (for references in articles please use NCBI:txid7955)
current name
Danio rerio (Hamilton, 1822)
basionym:
Cyprinus rerio Hamilton, 1822
homotypic synonym:
Brachydanio rerio
Genbank common name: zebrafish
NCBI BLAST name: bony fishes
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
heterotypic synonym
Brachydanio rerio frankei
heterotypic synonym
Danio frankei
heterotypic synonym
Danio rerio frankei
common name(s) leopard danio, zebra danio, zebra fish
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Otomorpha; Ostariophysi; Otophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Danionidae; Danioninae; Danio
   Entrez records   
Database name Direct links
Nucleotide 1,904,144
Protein 90,182
Structure 593
Genome 1
Popset 147
Conserved Domains 2
GEO Datasets 48,793
PubMed Central 27,648
Gene 109,924
HomoloGene 14,559
SRA Experiments 141,095
GEO Profiles 328,737
Protein Clusters 1
Identical Protein Groups 61,904
BioProject 3,437
BioSample 106,544
Assembly 27
PubChem BioAssay 2,075
Taxonomy 1

Comments and References:

image:Danio rerio

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Danio rerio

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
DNA barcoding : Danio rerio taxonomy/phylogenetic Barcodes of Life
46 records from this provider supplemental materials Dryad Digital Repository
GOLD: 11 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639469800: Danio rerio Tuebingen organism-specific Integrated Microbial Genomes
Danio rerio (Hamilton, 1822) taxonomy/phylogenetic Integrated Taxonomic Information System
Danio rerio taxonomy/phylogenetic Lifemap
Zebrafish Model Organism Database taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Cyprinus rerio Hamilton, 1822 taxonomy/phylogenetic Ocean Biogeographic Information System
2 records from this provider taxonomy/phylogenetic Plazi
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
4 records from this provider taxonomy/phylogenetic World Register of Marine Species
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]