Conserved Protein Domain Family
PUB_RNF31

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cd10464: PUB_RNF31 
PNGase/UBA or UBX (PUB) domain of the RNF31 (or HOIP) protein
This PUB domain is found in the p97 adaptor protein RNF31 (RING finger protein 31). The PUB domain functions as a p97 (also known as valosin-containing protein or VCP) adaptor by interacting with the D1 and/or D2 ATPase domains. The type II AAA+ ATPase p97 is involved in a variety of cellular processes such as the deglycosylation of ERAD substrates, membrane fusion, transcription factor activation and cell cycle regulation through differential binding to specific adaptor proteins. The RNF31 protein, also known as HOIP or Zibra, contains an N-terminal PUB domain similar to those in PNGase and UBXD1, suggesting its association with p97. RNF31 functions in a complex with another RING-finger protein (HOIL-IL), displaying E3 ubiquitin-protein ligase activity, and forming linear ubiquitin chain assembly complex (LUBAC) through linkages between the N- and C-termini of ubiquitin. LUBAC has been shown to activate the NF-kappaB pathway.
Statistics
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PSSM-Id: 198422
Aligned: 7 rows
Threshold Bit Score: 188.8
Created: 6-Jun-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:Predicted interaction of RNF31 to its adaptor protein based on the itneraction of similar proteins.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                       #  ##  #       ##  ###  # #   #                   
Q96EP0         52 DAARLVRCNAHgepr----nylnTLSTALNILEKYGRNLLSPQRPRYWRGVKFNNPVFRSTVDaVQGGRDVLRLYGYTEE 127  human
Q07FY8         14 SVEDLLKGGTQvsr-------lhSVTTALNILEKYGRNLLSPLRPKFWRSVKFNNPVFKTTVDaIEGGRFVLSLYGYSQS 86   western clawe...
XP_002108239   48 NLKRYIRLNQHqnn------flnIMIVAMYFLSKYASNLLNAGDNTIWRTIHLSNKVFQEKVYpMHGATQILSFMGYTES 121  Trichoplax ad...
XP_002612405  153 EFARLLLDNCRvnpq-----kilDLLAAVTILEKYARNLLKPVRPAFWTVVKFSNGIFKTKVDiIQGSRNVLHKLGYTIV 227  Florida lancelet
XP_002735465   99 DFPVLLRMNYNklgq----dsiaKLVSALGILEKYGINLLKVNKPNVWRSVRFSNVIFRTKVDiVEGARNVLQLLGYTED 174  Saccoglossus ...
Q4SKU9          1 NSASQVRASLS------------RLVKAFSILEKYGCNLTSPGRPRFWRSVKHNNPVFRSTVDaVKGGRRVLYLYGYTNQ 68   spotted green...
XP_003197916   50 AAEVMLTENGSgnnrkeslallqKLSTALNILEKYGSNLTNPSRPKYWRTVKYNNPVFRTTVDsIQGGRAVLNLYGYTNQ 129  zebrafish
Feature 1                                             
Q96EP0        128 qpDGLSFPEgqeEPDEHQVATVTLEVLLLRTELSLL 163  human
Q07FY8         87 lpDGLSFPDsvqEPDVSTVAAVTADVIILHHELNLL 122  western clawed frog
XP_002108239  122 tsGSMKFPSnvlLPDYSKVAKILMDLIVGMVELKQL 157  Trichoplax adhaerens
XP_002612405  228 arDGLAFPEdktEPDIEMVVQVATDLIQARLELEMI 263  Florida lancelet
XP_002735465  175 vdDGLTYPDeveNPNIAEVVKVTADLIIAKHEIEAI 210  Saccoglossus kowalevskii
Q4SKU9         69 qvDGLSFPEdasEPDKEKVAAVTLEVMVLRTELDVL 104  spotted green pufferfish
XP_003197916  130 qqDGLSFPDdvvEPDVGKVASVTLEVMCLRMELDML 165  zebrafish

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