Conserved Protein Domain Family
BMS1

?
cd01882: BMS1 
Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Statistics
?
PSSM-Id: 206669
Aligned: 15 rows
Threshold Bit Score: 348.945
Created: 6-Jan-2012
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
  next features
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity with other GTPases.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                          # ####                      
O94653      35 AFAVASAgrma-rqaMRTADISQKKLHVPMVDRTPde--aPPPVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGPIT 111  fission yeast
Q08965      30 AFAVAAPgkma-rtmQRSSDVNERKLHVPMVDRTPed--dPPPFIVAVVGPPGTGKTTLIRSLVRRMTKSTLNDIQGPIT 106  baker's yeast
CAI75300    37 AFTFSGGrrsvhrrfQHASEVEEKRLRRPRVYKVPe---vPPPLVVVVQGPKNVGKSTMITSLVKQYSKRNITNINGPIT 113  Theileria annulata
NP_172157   45 AFGVKSVvhak-kakHHAAEKEQKRLHLPKIDRNYg---eAPPFVVVVQGPPGVGKSLVIKSLVKEFTKQNVPEVRGPIT 120  thale cress
EAL93652    25 AFAFSNPgkgg-rqaARSHDIKEKRLHVPLVDRLPe---eAPPLVVAVVGPPGVGKTTLIKSLIRRYTKQTLSTPKGPLT 100  Aspergillus fumi...
XP_649470   42 AFVAQTRvaak-qhyQYTQTRIQEKLHVPIMDRSVe---dPPPTVIVVCGPPGCGKTTFIQALVKTYTKQNLKDVNGPIT 117  Entamoeba histol...
XP_637074   44 AFISQAAyasn-rltIRNLDREAKRVNLPVIDRSGta-veTPPYVIAVVGPPKCGKTTLIRSLIKNYTRHSISDVKGPIT 121  Dictyostelium di...
AAF49383    49 AFAINSAqrae-rnfRRKEDLTAKKQHIPVVDQTPn---vPPPVLIAVVGPPKVGKTTLIKDLIKSFTRTNVTDIKGPIT 124  fruit fly
XP_761869   35 AFISANInvaq-kqiLRNAEKEQKRFHVPLADRTPed--ePPPIIVAVVGPEGVGKTTLMRSLIRRYTKHTLADIKGPVT 111  Ustilago maydis 521
XP_828973   47 AFQGPTAssrkgqqlLRSLEKRETALHVPVVDKTLrhvvaEPPLLVAVVGPPGVGKSTLIRSMVKFYSNRNVQVVRGLIT 126  Trypanosoma brucei
Feature 1                                                                        ## #          
O94653     112 VVAGKKRRITFLECPNDL-SSMIDVAKIADLVLLLIDANFGFEMETMEFLNILAp-HGMPRIMGVLTHLDLFKKTSTLRE 189  fission yeast
Q08965     107 VVSGKHRRLTFLECPADDlNAMIDIAKIADLVLLLIDGNFGFEMETMEFLNIAQh-HGMPRVLGVATHLDLFKSQSTLRA 185  baker's yeast
CAI75300   114 LVSSKSRRITLIECGNSM-IDMIDCCKIADIAILMVDGSYGYEMETLEFVNMMQv-HGFPRVIGVLTHLDSFKDNKTMRK 191  Theileria annulata
NP_172157  121 IVQGKQRRFQFVECPNDI-NAMVDCAKVADLALLVVDGSYGFEMETFEFLNIMQv-HGFPRVMGVLTHLDKFNDVKKLRK 198  thale cress
EAL93652   101 VVTAKRRRLTIIECPSDSlASMIDISKIADIVLLMIDGNYGFEMETMEFLNVLAssGMPGNVFGILTHLDLFKKQSTLRA 180  Aspergillus fumi...
XP_649470  118 LITGKHHRITLIECPNDL-NGMLDCAKIADVAVMLIDASYGFEMNTFEFIGMLQa-QGFPKVIGCLTHLDKVKNNKLAKK 195  Entamoeba histol...
XP_637074  122 IVAGKKRRLTFIECNNDL-NSMIDTAKVADLVLLLIDASYGFEMETFEFLNVLKt-HGFPKVIGILTHLDGFKNNKKLKK 199  Dictyostelium di...
AAF49383   125 IVTSKKRRITLLECNNDV-NSMIDVAKCADLVLLLCDASYGFEMEIFEFLNICQv-HGMPKIMGVLTHLDMIKNPKQLRK 202  fruit fly
XP_761869  112 VVTGKKRRVTFIECNNDI-NSMIDIGKVADLVLLMIDGSFGFEMETMEFLNVLQs-HGFPKVIGVLTHLDLIKKAKTLKA 189  Ustilago maydis 521
XP_828973  127 VVAGRSRRVTFLECPNTL-TAMCDVAKVADLILLMVDGSFGFEMETFEFLNIAQv-HGFPRMFGIVSHLDQLKTGKALRK 204  Trypanosoma brucei
Feature 1                            ###                                                     
O94653     190 AKKRLKHRFWTELYQGAKLFYLSGVLNGRYPdREILNLSRFISVMKfrp-lrWRNQHPYLLADRMEDLTLPVDIEQNP 266  fission yeast
Q08965     186 SKKRLKHRFWTEVYQGAKLFYLSGVINGRYPdREILNLSRFISVMKfrp-lkWRNEHPYMLADRFTDLTHPELIETQG 262  baker's yeast
CAI75300   192 TKKILKKRFWSELYDGAKMFYFTGIQHDRYKkNEVLNLARYISSQKpps-inWRLSHPYTLSLRHEVIENKDDLCKVY 268  Theileria annulata
NP_172157  199 TKHHLKHRFWTEIYHGAKLFYLSGLIHGKYTpREVHNLARFVIVIKpqp-ltWRTAHPYVLVDRLEDVTPPEKVQMDK 275  thale cress
EAL93652   181 AKKRLKHRFWSELYNGAKLFYLSGVVNGRYPdREIHNLSRFLSVMKnprplvWRNSHPYALADRFLDITPPTQIEENP 258  Aspergillus fumiga...
XP_649470  196 AKKTLKKRFWRETYAGAKLFNLSGITHGSYPkTEIKIIARHLAVIKtrp-iiWRSNHSYLVADRVEDLTEPQDIAEDP 272  Entamoeba histolyt...
XP_637074  200 TKKKFKDRFWTEIYEGAKLFYLSGIIHGKYPkVEIHNLARFISVANfip-lsWRNTHPYVYVDRFEDTTEPELVRQNP 276  Dictyostelium disc...
AAF49383   203 RKKELKHRFWTEVYDGAKLFYLSGLLHGEYLrNEVKNLGRFISVMKfrp-lqWRGAHSYLLVDRIEDVTNTDRVRRDP 279  fruit fly
XP_761869  190 TKKRLKHRFWTEIYDGAKLFYLSGIINGRYPdTEIQNLSRFIGVMKfrp-liFRNAHPYVLADRMEDLTPREEIRANP 266  Ustilago maydis 521
XP_828973  205 KKRFLRHRFWHEVAAGAKVLCLAPMVRGMYRsTDVLKLHRLLICVEpki-qnWRNTHSCVVVDRYEDITAPQNVVDNE 281  Trypanosoma brucei

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap