Conserved Protein Domain Family
RfaJ

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COG1442: RfaJ (this model, PSSM-Id:224359 is obsolete and has been replaced by 441051)
Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Statistics
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PSSM-Id: 224359
Aligned: 30 rows
Threshold Bit Score: 221.422
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
15901598   1 MNKTIVLAGDRNYTRQLETTIKSILYHNR--DVKIYILNQDIMPDWFRKPRKIARMLGSEIIDVKLpEQTVFQDWEKQDH 78  Streptococcus pneum...
15833756  26 ETFNVSWGIDENYQVGAAISIASILENNKqnKFTFHIIADYLDKEYIELLSQLATKYQTVIKLYHI-DSEPLKALPQSNI 104 Escherichia coli O1...
15833758  25 NTLDIAFGIDRNFLFGCGVAIASILLNNReiSCEFHVFTDYISDKDKLYFSDLAKQYNSRINIYVI-NCDKLKSLPSTKN 103 Escherichia coli O1...
15892643     --------------------------------------------------------------------------------     Rickettsia conorii
15892644     --------------------------------------------------------------------------------     Rickettsia conorii
6174967   24 NVLNISYGVDENYLDGVGVSIASVVLNNn-iPLAFHIICDSYSPCFVKYIERLAVQHHIKISLYLI-KVESLEVLPQTKV 101 Salmonella typhimurium
20141695  26 DKFNIAYGIDKNFLFGCGVSIASVLLANPekALAFHVFTDFFDSEDQQRFEALAKQYATQIVVYLI-DCERLKSLPSTKN 104 Salmonella typhimurium
15804170  25 NTLDIAFGIDRNFLFGCGVAIASILLNNReiSCEFHVFTDYISDKDKLYFSDLAKQYNSRINIYVI-NCDKLKSLPSTKN 103 Escherichia coli O1...
15804168  26 ETFNVSWGIDENYQVGAAISIASILENNKqnKFTFHIIADYLDKEYIELLSQLATKYQTVIKLYHI-DSEPLKALPQSNI 104 Escherichia coli O1...
132483    27 LCLDIAYGTDKNFLFGCGISIASILKYNEgsRLCFHIFTDYFGDDDRKYFDALALQYKTRIKIYLI-NGDRLRSLPSTKN 105 Escherichia coli
15901598  79 ISSITYARYFIADYIQE--DKVLYLDSDLIVNTSLEKLFSICLE-EKSLAAVKD-----------------TDGITFNAG 138 Streptococcus pneum...
15833756 105 WPVSIYYRLLSFDYFSArlDSLLYLDADIVCKGSLNELIALEFK-DEYGAVVIDvdamqsks-aerlcnedFNGSYFNSG 182 Escherichia coli O1...
15833758 104 WTYATYFRFIIADYFYHkhEKILYLDADIACKGSIKELLDYQFStNEIAAVVAErdvewwqnrasvlttpqLASGYFNAG 183 Escherichia coli O1...
15892643   1 ---------------------------------------------------------------mtkeckrnITHSYKNSR 17  Rickettsia conorii
15892644     --------------------------------------------------------------------------------     Rickettsia conorii
6174967  102 WSRAMYFRLFAFDYLSKkvNTLLYLDADVVCKGSLQDLLQLDLT-EKIAAVVKDvdsiqnkv-nerlsafnLQGGYFNSG 179 Salmonella typhimurium
20141695 105 WTYATYFRFIIADYFSDktDRVLYLDADIACKGSIQELIDLNFAeNEIAAVVAEgelewwtkrsvslatpgLVSGYFNAG 184 Salmonella typhimurium
15804170 104 WTYATYFRFIIADYFYHkhEKILYLDADIACKGSIKELLDYQFStNEIAAVVAErdvewwqnrasvlttpqLASGYFNAG 183 Escherichia coli O1...
15804168 105 WPVSIYYRLLSFDYFSArlDSLLYLDADIVCKGSLNELIALEFK-DEYGAVVIDvdamqsks-aerlcnedFNGSYFNSG 182 Escherichia coli O1...
132483   106 WTHAIYFRFVIADYFINkaPKVLYLDADIICQGTIEPLINFSFPdDKVAMVVTEgqadwwekrahslgvagIAKGYFNSG 185 Escherichia coli
15901598 139 VLLINNKKWRQEKLKERLIEQSivTMKEveEgRFEHFNgdQTIFNQVLQDDWLELGRAYNLQVGHDIVALYNnw-qEHLA 217 Streptococcus pneum...
15833756 183 VMYINLREWLKQRLTEKFFDLL--SDESiiK-KLKYPD--QDILNLMFLHHAKILPRKYNCIYTIKSEFEEKnseyYTRF 257 Escherichia coli O1...
15833758 184 FLLINIDEWNLNNISSKAIEML--RDPDwvS-KITHLD--QDVLNVLLNGKVKFISEKYNTRYSINYELKDK----VDNP 254 Escherichia coli O1...
15892643  18 VVFLNLKNMQKKQDKNMLLETL--QKSK--C-DFSFPN--QDLLNLIDEMELFYIF------------------------ 66  Rickettsia conorii
15892644   1 --------------------------------------------------------MRWNCFTYFETQSPYF------SY 18  Rickettsia conorii
6174967  180 VVFVNLKLWKENALTKKAFLLL--AGKEa-D-SFKYPD--QDVLNILLQDKVIFLPRPYNTIYTIKSELKDKshkkYSNI 253 Salmonella typhimurium
20141695 185 FILINIPLWTAENISKKAIEML--KDPEvvQ-RITHLD--QDVLNIFLVNKARFVDKKFNTQFSLNYELKDS----VINP 255 Salmonella typhimurium
15804170 184 FLLINIDEWNLNNISSKAIEML--RDPDwvS-KITHLD--QDVLNVLLNGKVKFISEKYNTRYSINYELKDK----VDNP 254 Escherichia coli O1...
15804168 183 VMYINLREWLKQRLTEKFFDLL--SDESiiK-KLKYPD--QDILNLMFLHHAKILPRKYNCIYTIKSEFEEKnseyYTRF 257 Escherichia coli O1...
132483   186 FLLINTAQWAAQQVSARAIAML--NEPEiiK-KITHPD--QDVLNMLLADKLIFADIKYNTQFSLNYQLKES----FINP 256 Escherichia coli
15901598 218 FNDKPVVIHFTTYRKPWTTLTANRYRdlwwefhDLEWSQILQhhmgefelispldkefscltltnsqdlegieelvtalp 297 Streptococcus pneum...
15833756 258 INDDTVFIHYTGITKPWHDWA-NYAS-------ADYFRNIYN-------------------------------------- 291 Escherichia coli O1...
15833758 255 VNDDTVFIHYVGPTKPWHEWA-DYPV-------SRSFLIAKA-------------------------------------- 288 Escherichia coli O1...
15892643     --------------------------------------------------------------------------------     Rickettsia conorii
15892644  19 F-----ILHYAGP-KPWTTDK----------------------------------------------------------- 33  Rickettsia conorii
6174967  254 INDNTILIHYTGATKPWHAWA-NYPS-------VIYYKNARL-------------------------------------- 287 Salmonella typhimurium
20141695 256 VDAETVFVHYIGPTKPWHSWG-AYPV-------SQYFLQAKS-------------------------------------- 289 Salmonella typhimurium
15804170 255 VNDDTVFIHYVGPTKPWHEWA-DYPV-------SRSFLIAKA-------------------------------------- 288 Escherichia coli O1...
15804168 258 INDDTVFIHYTGITKPWHDWA-NYAS-------ADYFRNIYN-------------------------------------- 291 Escherichia coli O1...
132483   257 VTNDTIFIHYIGPTKPWHDWAWDYPV-------SQAFMEAKN-------------------------------------- 291 Escherichia coli
15901598 298 evvfhIAAWTDMGDklkklavynnvrlhpqivppvlDKLKKSTNLYLDINHgsadenflkslqeqektllafqstqhgel 377 Streptococcus pneum...
15833756 292 -----ISPWRNIPY----------------------KKAVKKHEYKEKYKH----------------------------- 315 Escherichia coli O1...
15833758 289 -----ASPWSKEDL----------------------LKPVNSNQYRYCAKH----------------------------- 312 Escherichia coli O1...
15892643     --------------------------------------------------------------------------------     Rickettsia conorii
15892644  34 -----QELWKTNQ-----------------------DKLDKITKYYWRYKE----------------------------- 56  Rickettsia conorii
6174967  288 -----NSPWKDFPA----------------------KDARTIVEFKKRYKH----------------------------- 311 Salmonella typhimurium
20141695 290 -----NSPWSHCAL----------------------LNPVTSHQLRYAAKH----------------------------- 313 Salmonella typhimurium
15804170 289 -----ASPWSKEDL----------------------LKPVNSNQYRYCAKH----------------------------- 312 Escherichia coli O1...
15804168 292 -----ISPWRNIPY----------------------KKAVKKHEYKEKYKH----------------------------- 315 Escherichia coli O1...
132483   292 -----ASPWKNTAL----------------------LKPNNSNQLRYSAKH----------------------------- 315 Escherichia coli
15901598 378 gqivfengkvsfmidtikdfkknghltcfrqlpsltcltftasqyieqldylagqlpnvvfqiaawtamgpklydlsnRY 457 Streptococcus pneum...
15833756 316 ------------------------------------------------------------------------------LL 317 Escherichia coli O1...
15833758 313 ------------------------------------------------------------------------------KF 314 Escherichia coli O1...
15892643     --------------------------------------------------------------------------------     Rickettsia conorii
15892644  57 ------------------------------------------------------------------------------IT 58  Rickettsia conorii
6174967  312 ------------------------------------------------------------------------------LL 313 Salmonella typhimurium
20141695 314 ------------------------------------------------------------------------------MF 315 Salmonella typhimurium
15804170 313 ------------------------------------------------------------------------------KF 314 Escherichia coli O1...
15804168 316 ------------------------------------------------------------------------------LL 317 Escherichia coli O1...
132483   316 ------------------------------------------------------------------------------ML 317 Escherichia coli
15901598 458 PNIQLYPAisrdkldelkekmdayldinlltstsdIVAEMAHLSKPILAF 507 Streptococcus pneumoniae TIGR4
15833756 318 YQKKFLDG---------------------------VFTAIKYNVMKG--- 337 Escherichia coli O157:H7
15833758 315 KQKHYMAG---------------------------IFNYLKYYKEKCF-- 335 Escherichia coli O157:H7
15892643     --------------------------------------------------     Rickettsia conorii
15892644  59 PWSSIN-------------------------------------------- 64  Rickettsia conorii
6174967  314 VQGHYFKG---------------------------LLAGSAYLYRKLFHK 336 Salmonella typhimurium
20141695 316 NQKHYTSG---------------------------INYYIAYFKRKLLE- 337 Salmonella typhimurium
15804170 315 KQKHYMAG---------------------------IFNYLKYYKEKCF-- 335 Escherichia coli O157:H7 EDL933
15804168 318 YQKKFLDG---------------------------VFTAIKYNVMKG--- 337 Escherichia coli O157:H7 EDL933
132483   318 KKHRYLKG---------------------------FSNYLFYFIEKIKH- 339 Escherichia coli
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