Conserved Protein Domain Family
SCP_HrTT-1
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cd05559: SCP_HrTT-1 (this model, PSSM-Id:240186 is obsolete and has been replaced by 349405)
SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Links
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Statistics
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PSSM-Id: 240186
Aligned: 5 rows
Threshold Bit Score: 232.404
Created: 12-Oct-2007
Updated: 17-Jan-2013
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q9ET66        26 KQTMVDLHNQYRAqvsppasdmLQMRWDDELAAFAKAYAQKcvWGHNKerg-----rrGENLFAItde---gmdVPLAVG 97  house mouse
AAP91764      71 RDVLVNAHNQARRttsptatnmLKMTWDNELAVLAANYARKclFAHNRdrshsrfhpvGENIYISsgkafntryGSDAVR 150 Ciona intestinalis
XP_417954     27 KRIILDEHNKYRSqvsppamdmLKMSWDTELEAFAQAYAEKciWDHNKerg-----rrGENLFAMapm----ldLEFAVE 97  chicken
O44228       127 RMALLRTHNARRAiaqpkaanmRRMTWDMELERLAVAYSRKciYEHNPrtkhsrfeyvGENLFIStgyaftpslMKHAVE 206 Halocynthia ror...
XP_001336676  28 ILNIVDLHNELRSqvqpsaafmQKVVWDETIRLVAEGYAAKciWDHNPdleh---ltmGENLFVGtgp----fnATKAVM 100 zebrafish

Q9ET66        98 NWHEEHEYYNFstatcdpnqmCGHYTQVVWSKTERIGCGSHFcetlqg--veeaniHLLVCNYE 159 house mouse
AAP91764     151 DWNNEKVDYNYqtrtctpnrmCGHYTQVVWAETFKVGCGVATcptvnvrgnrwtdaTILICNYG 214 Ciona intestinalis
XP_417954     98 DWNAEEKFYNLttstcvsgqmCGHYTQVVWASTHRIGCGSKFcekieg--ietedmYLLVCNYY 159 chicken
O44228       207 AWDDEKQYYDYetkkcqrgkmCGHYTQVVWADTFKMGCGVTRcsdidvrgrrwknaILLVCNYG 270 Halocynthia roretzi
XP_001336676 101 DWFNENLDYNYntndcaedkmCGHYTQLVWANTTKIGCASYFcdtlek--lhfekaTLLICDYY 162 zebrafish
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