1X4A


Conserved Protein Domain Family
RRM1_SRSF1

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cd12597: RRM1_SRSF1 (this model, PSSM-Id:241041 is obsolete and has been replaced by 410010)
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RNA recognition motif 1 in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins
This subgroup corresponds to the RRM1 of SRSF1, also termed alternative-splicing factor 1 (ASF-1), or pre-mRNA-splicing factor SF2, P33 subunit. SRSF1 is a splicing regulatory serine/arginine (SR) protein involved in constitutive and alternative splicing, nonsense-mediated mRNA decay (NMD), mRNA export and translation. It also functions as a splicing-factor oncoprotein that regulates apoptosis and proliferation to promote mammary epithelial cell transformation. SRSF1 is a shuttling SR protein and contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), separated by a long glycine-rich spacer, and a C-terminal RS domains rich in serine-arginine dipeptides.
Statistics
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PSSM-Id: 241041
Aligned: 10 rows
Threshold Bit Score: 133.367
Created: 19-Sep-2011
Updated: 1-Feb-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1X4A_A        24 RIYVGNLPpDIRTKDIEDVFYKYGAIRDIDLKNRRGgpPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97  human
Q5ZML3        17 RIYVGNLPpDIRTKDIEDVFYKYGAIRDIDLKNRRGgpPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 90  chicken
Q6DII2        17 RIYVGNLPpDIRTKDIEDVFYKYGAIRDIDLKNRRGgpPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 90  western clawed frog
Q7SXP4        16 RIYVGNLPpDIRTKDVEDVFYKYGAIRDIDLKNRRGgpPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPR 89  zebrafish
XP_002611807   9 RIYVGNLPpDIRVKDIEDIFYKYGNIRHIDLKNKRGp-PFAFVEFDDKRDAEDAVRGRDGYNYDGYRLRVEFPR 81  Florida lancelet
EFX71923      10 RIYVGNLPpDIRTKDIEDLFYKFGKIAYIDLKNRRGp-PFAFVEFEDPRDAEDAVHARDGYDYDGYRLRVEFPR 82  common water flea
NP_652611      8 RIYVGNLPpDIRTKDIQDLFHKFGKVTFVDLKNRRGp-PFAFVEFEDARDADDAVKARDGYDYDGYRLRVEFPR 80  fruit fly
XP_002734208  15 RIYVGNLPpDIRVKDIEDIFYKYGNILDIDLKNRRGp-PFSFVEFEDKRDAEDAVRGRDGYDYDGYRLRVEFPR 87  Saccoglossus kowalevskii
XP_002131859  10 RVYVGNLPpDVREKDVEDLFYKYGSIRHVNLKNRRGp-PFAFVEFEDRRDAEDSVHGRNGYNFDGYKLRVEHPR 82  Ciona intestinalis
AEO35832       9 RIYVGNLPpDIRSKDIEDLFYKFGKITFIDLKNRRGp-PFAFVEFDDPRDAEDAVHARDGYDYDGYRLRVEFPR 81  Amblyomma maculatum
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