2DNQ


Conserved Protein Domain Family
RRM1_RBM4

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cd12606: RRM1_RBM4 (this model, PSSM-Id:241050 is obsolete and has been replaced by 410018)
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RNA recognition motif 1 in vertebrate RNA-binding protein 4 (RBM4)
This subgroup corresponds to the RRM1 of RBM4, a ubiquitously expressed splicing factor that has two isoforms, RBM4A (also known as Lark homolog) and RBM4B (also known as RBM30), which are very similar in structure and sequence. RBM4 may function as a translational regulator of stress-associated mRNAs and also plays a role in micro-RNA-mediated gene regulation. RBM4 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a CCHC-type zinc finger, and three alanine-rich regions within their C-terminal regions. The C-terminal region may be crucial for nuclear localization and protein-protein interaction. The RRMs, in combination with the C-terminal region, are responsible for the splicing function of RBM4.
Statistics
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PSSM-Id: 241050
Aligned: 4 rows
Threshold Bit Score: 136.156
Created: 19-Sep-2011
Updated: 1-Feb-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DNQ_A         9 VKLFIGNLPreaTEQEIRSLFEQYGKVLECDIIKNYGFVHIEDkTAAEDAIRNLHhyKLHGVNINVE 75  human
Q6IQ97         2 VKIFVGNLSpntTAEEIRSLFSQYGKISECDIVKNFGFVHMDSkSEADEAIQNLHhyMLNGMAMNVE 68  zebrafish
NP_001087983   2 VKLFVGNLPpeaTQPELKSLFEQFGRVTECDIIKNYGFVHMDDkKAADEAVRNLNhyKLHNVSINVE 68  African clawed frog
XP_003643577   2 VKLFIGNLPreaTEQEIRSLFEQYGKVLECDIIKNYGFVHIEDkTAAEDAIRNLHhhKLHGVCINVE 68  chicken
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