Conserved Protein Domain Family
ePHD_KMT2A

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cd15693: ePHD_KMT2A 
Extended PHD finger found in histone-lysine N-methyltransferase 2A (KMT2A)
The extended plant homeodomain (ePHD) zinc finger is characterized as Cys2HisCys5HisCys2His. This subfamily includes the ePHD finger of KMT2A. KMT2A also termed ALL-1, or CXXC-type zinc finger protein 7, or myeloid/lymphoid or mixed-lineage leukemia protein 1 (MLL1), or trithorax-like protein (Htrx), or zinc finger protein HRX, is a histone methyltransferase that belongs to the MLL subfamily of H3K4-specific histone lysine methyltransferases (KMT2). It regulates chromatin-mediated transcription through the catalysis of methylation of histone 3 lysine 4 (H3K4), and is frequently rearranged in acute leukemia. KMT2A functions as the catalytic subunit in the MLL1 complex, which also contains WDR5, RbBP5, ASH2L and DPY30 as integral core subunits required for the efficient methylation activity of the complex. The MLL1 complex is highly active and specific for H3K4methylation. KMT2A contains a CxxC (x for any residue) zinc finger domain, three PHD fingers, a Bromodomain domain, this extended PHD finger, two FY (phenylalanine tyrosine)-rich domains, and a SET (Suppressor of variegation, Enhancer of zeste, Trithorax) domain.
Statistics
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PSSM-Id: 277163
Aligned: 4 rows
Threshold Bit Score: 253.769
Created: 19-Mar-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 12 residue positions
Conserved feature residue pattern:C C H C C C C C H C C HClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure evidence that human Borjeson-Forssman-Lehmann syndrome-associated protein PHF6 (PDB 4NN2) binds three Zn2+ ions through its ePHD finger
  • Comment:The extended PHD finger is characterized by Cys2HisCys5HisCys2His.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                       #  #                             #  #        #    #
Q03164    1871 RQCALCLTYGDDSANDAGRLLYIGQNEWTHVNCALWSAEVFEDDDGSLKNVHMAVIRGKQLRCEFCQKPGATVGCCLTSC 1950 human
EMC78314  1678 RQCALCLKYGDDSANDAGRLLYIGQNEWTHVNCALWSAEVFEDDDGSLKNVHMAVIRGKQLRCEFCQKSGATVGCCLTSC 1757 domestic pigeon
AAI55711  1830 RQCALCLKYGDDNANDAGRLLYIGQDEWTHVNCALWSAEVFEDDDGSLKNVHMAVIRGKQLRCELCLKLGATVGCCLTSC 1909 western clawed frog
Q071D6     582 RQCALCLNYGDEKTNDCGRLLYIGHNEWAHVNCALWSAEVYEDVDGALKNVHMAVSRGKQLQCKNCHKPGATVSCCMTSC 661  zebrafish
Feature 1          #  #               #  #      
Q03164    1951 TSNYHFMCSRAKNCVFLDDKKVYCQRHRDLIKG 1983 human
EMC78314  1758 TSNYHFMCSRAKNCVFLDDKKVYCQRHRDLIKG 1790 domestic pigeon
AAI55711  1910 TSNYHFMCSRKKNCVFLEDKKVYCQKHKDLIKG 1942 western clawed frog
Q071D6     662 TNNYHFMCARQQQCAFLEDKKVYCQHHKDLVKG 694  zebrafish

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