Conserved Protein Domain Family
HJURP_C
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pfam12347: HJURP_C (this model, PSSM-Id:289143 is obsolete and has been replaced by 463543)
Holliday junction regulator protein family C-terminal repeat
Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, pfam10384, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes.
Links
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Statistics
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PSSM-Id: 289143
Aligned: 37 rows
Threshold Bit Score: 57.341
Created: 28-Jun-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q6S5H1         91 KenkqlSSPEETDKq-FVLTPRTEAKYNKINEEFDQMMKKNFIP---Q-----QSNAggdypsQMPVAIPVQHSN 156  starlet sea anemone
CAG04563      293 S-----ESPEPEEP--FSLTPRTEEKYKKIDEEFDKMMQNYRLS---Stv--pQPTF------SMPVTVPVSNQN 349  spotted green puff...
XP_011605174  125 kehrgcDSPDPDAS--YVLTPHTEEKYKKINEEFDNMMRNHKIP---Sal--pQQNF------SMHVAVPVSNPN 186  torafugu
ELW59860      173 kkhrecESPEVDe--vFALTPQTEEKYKKIDEEFDKMMQSYRLA---Sav--pAPNF------AMPVTVPVSNQS 234  Chinese tree shrew
XP_007246199   91 kehrgcESPDPDTSs-YILTPHTEEKYQKINEEFDNMMRNHKIP---Avl--sQQSF------TLPVAVPVDDPS 153  Mexican tetra
XP_005020718  111 kenkgcESPDPDSS--YALTPRTEEKYKKINEEFDNMIKSHKIPvstKav--pPPNF------EMPVSIPVSNHN 175  mallard
XP_005473282  139 kenkggESPELESAl--ILTPRTEEKYKQINEEFDHMIKTHKIP---Qav--pPSNY------DMPVSIPVSNQN 200  Nile tilapia
XP_009301236   91 kehrgcDSPDPDAS--YVLTPHAEEKYQKINEEFDNMMRNHKIP---Atl--sHQSF------SMPLTLPVTNPt 152  zebrafish
XP_005997230   91 kglngcESPDPDAddsVGHSPESEDKYRKINEDIDLMISRQRLC---Av---pPPNF------EMPVSIPVTNPN 153  coelacanth
XP_011876930   94 kgamspESPEPDAIe-YNLTPRTEAKYTKIDEEFQMMMQRHQHN---GsrtmgQSNY------TLPVSVPVNSYg 158  Vollenhovia emeryi
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