Conserved Protein Domain Family
RPA_interact_M

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pfam14767: RPA_interact_M (this model, PSSM-Id:317206 is obsolete and has been replaced by 434193)
Replication protein A interacting middle
This family of proteins represents the middle domain of replication protein A (RPA) interacting protein. RPA interacting protein is involved in the import of RPA into the nucleus. This domain is responsible for interaction with RPA.
Statistics
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PSSM-Id: 317206
Aligned: 26 rows
Threshold Bit Score: 47.3732
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002320549  70 ALQDIVSDELEKIKNSSSSSLNEQlkipTRa----lEAnddmlweydglhdayqGECEEILLEMQKIFYEDLRDETTREE 145 black cottonwood
XP_001624884  66 VIDKVMDEEWTRLSKEHADLPQWK----PTrrsfrpFSnv------------plEPSEEADINEILSVMDEIQQELMEEE 129 starlet sea ane...
XP_002598832  60 VVREVMEEEWKRLVQEDSVTPSNS----Pv------------------------SAGAEDDLDSILALMEDIKQELLKEE 111 Florida lancelet
XP_004946525  54 LVPEVMEREWRCLQAERGAPGERGq----------------------------rELQQMPQDPDELAVLDEIQQELILQE 105 chicken
XP_005988635  57 LVQEVMEEEWKVLQSSNRAFSSLWrqedCT------------------------RVLSMLKDTDELTVLEEIQQELAAQE 112 coelacanth
XP_005811863  55 IVQEVMEEEWRALQPDDQRLPSLWgphgVA------------------------QMFSVMEECDELAVLEEIHRELMSQE 110 southern platyfish
XP_003964443  58 IVQEVMEEEWTALRSEERGLPSLWgpagMA------------------------EMLNVMKEYDELAVLEEIQQELMSHE 113 torafugu
XP_005171789  56 LVQEVMEEEWSALKASH-SLPSLWngnpIP------------------------DVYTQQQEFDELSALEEIQQELIAQE 110 zebrafish
XP_007255891  59 LVQEVMEMEWNTLKSANQSLPSLWkktgVK------------------------DMYSDPQEYDELAILEEIQQELMSQE 114 Mexican tetra
NP_001120254  57 LVQEVMEEEWKAMQFENGSFPSMWkkeaFS------------------------QALTIMQDPDELATFEEIKQELLLEE 112 western clawed ...
XP_002320549 146 P--KNYIETWEDKEDDYLAHA 164 black cottonwood
XP_001624884 130 KliLAQYDENQKFEEESLCAA 150 starlet sea anemone
XP_002598832 112 HsiLAQLDAEMRFEEEAMLAT 132 Florida lancelet
XP_004946525 106 QlvIEEYERSLQFDEECLNAI 126 chicken
XP_005988635 113 QsiIEEYERSLQFDEECLNAV 133 coelacanth
XP_005811863 111 MsiIDEYERNLQFEQQYISSL 131 southern platyfish
XP_003964443 114 MniIEEYERNLQFEEQYISSV 134 torafugu
XP_005171789 111 LaiLEEYNNSMRYEEQYLDSV 131 zebrafish
XP_007255891 115 RsiIEEYHKSQQYEEQYLNVV 135 Mexican tetra
NP_001120254 113 KamVDEFENILQFEEQCLDSV 133 western clawed frog
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