3BKH,4BJ4,4C2G,4XXT


Conserved Protein Domain Family
PG_binding_1
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pfam01471: PG_binding_1 (this model, PSSM-Id:396175 is obsolete and has been replaced by 460223)
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Putative peptidoglycan binding domain
This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
Links
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Statistics
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PSSM-Id: 396175
Aligned: 197 rows
Threshold Bit Score: 34.4204
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3BKH_A        17 RGDEVCQLQTLLNLCgyDvG--KPD---GIFGNNTFNQVVKFQKDNCLD-SDGIVGKNTWAEL 73  Pseudomonas virus phiKZ
Q6N403       187 EGDEVRLLQQALADYgyR-V--PVN---GSYDHATTDVVTAFQRHFRPEkVDGIADASTLATL 243 Rhodopseudomonas palustris
Q63K75       244 frgDIAELQAKLLAYgyD-T--PQT---GVLDLRTTDVIAAFQMHFRPArYDGVPDAETVAIL 300 Burkholderia pseudomallei
Q7N3C7       208 DKASVELIQKTLAKYgyT-I--PQT---GVLDEDTRKTISAFQMHFRPDdISGNPDAQTESIA 264 Photorhabdus laumondii subsp. la...
Q83EE5       184 ETTDIRWLQRHLKTYgyS-I--EET---GELDKKTQQVVCAFQMHFRPTdYSGIPDKETYAIL 240 Coxiella burnetii
4BJ4_A       184 QLPDVRWFQQQLARHgyL-V--PQT---GELEKDTRDVIGAFQMKYRPArFDGEPDLETAALL 240 Pseudomonas aeruginosa PAO1
Q88RJ9       199 NPPSVGWYQQELARFgyQ-I--EQT---GVLDVATRHVVAAFQMRFRPQrFDGMPDAQTAAML 255 Pseudomonas putida KT2440
Q89RI8       117 QGANDDLLRKRLIVSg--dL--SADkasGAFDQDLADAVKRFQARHGLA-PTGMVTPRTLAAM 174 Bradyrhizobium japonicum
Q2YN97       115 nDPAVQYLRKRLMISgdLpQeaGLS---TAFDTYVDAALKRFQARHGLP-ADGVMGQFTYAAM 173 Brucella abortus 2308
WP_020812464 102 HGQPVEALQSMLSIYgyG-V--EIT---GAYCEKTEGAVAAFQRHFRPAlVDGIADFSTIDTL 158 Agrobacterium tumefaciens
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