4XXT,3BKH,4BJ4,4C2G


Conserved Protein Domain Family
PG_binding_1
?
pfam01471: PG_binding_1 
Click on image for an interactive view with Cn3D
Putative peptidoglycan binding domain
This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
Links
?
Statistics
?
PSSM-Id: 460223
Aligned: 194 rows
Threshold Bit Score: 34.4132
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
4XXT_A  42 SGSDVKSIQDKLNNYgyA-----------I-TADGKFGPSTDWAVRDFQYKHNIAXDGSVSDQTXNLL 97  Clostridium acetobutylicum ATCC 824
O34320 222 KNSFIHLFQAALIFNgyN-----------V-PFDGVYSESVRSKVKAFQSFAKLQQSGTADFQTWASL 277 Bacillus subtilis subsp. subtilis...
O31447 218 RTGFVLIVQYALYCNgkSfd--------pG-EFDGKYGVGVVSAVKAFQEFMCLPQTGYADMPTIKAL 276 Bacillus subtilis subsp. subtilis...
Q9H239  29 GQELRKEAEAFLEKYgyLn---------eQ-VPKAPTSTRFSDAIRAFQWVSQLPVSGVLDRATLRQM 86  human
Q8N119  46 PIADLHAAQRFLSRYgwSgvwaawgpspeG-PPETPKGAALAEAVRRFQRANALPASGELDAATLAAM 112 human
Q6Z7S6  58 EREGLGRLKDYLSHFgyLppp------psSsPYSDAFDDSLEAAIAAYQRNFGLNATGELDTDTVDQM 119 Japanese rice
Q5WDG4 398 VSDQIGNAQKMLTGLgfDv----------G-RDDGYFDEKTEEAIIAFQQSHDLQANGELNEETAGKL 454 Bacillus clausii KSM-K16
Q8ENJ3 406 TSEEIANMQVMLTGLgyDt----------G-RTDGYFDEQTAEAVKDFQADNDLEATGEVDSETGGLI 462 Oceanobacillus iheyensis
4C2G_A 355 NNEDVKHAQVLLKGLsfDp----------G-REDGYFSKDMKKAVMAFQDQNKLNKTGVIDTRTAETL 411 Bacillus subtilis subsp. subtilis...
Q5KVA9 399 NDEQIANAQKMLKGLgfNp----------G-RTDGYFSKETEQAVQAFQKANQLPVTGRIDEATADAL 455 Geobacillus kaustophilus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap