Conserved Protein Domain Family
RRM1_CoAA

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cd12608: RRM1_CoAA 
RNA recognition motif 1 (RRM1) found in vertebrate RRM-containing coactivator activator/modulator (CoAA)
This subgroup corresponds to the RRM1 of CoAA, also termed RNA-binding protein 14 (RBM14), or paraspeckle protein 2 (PSP2), or synaptotagmin-interacting protein (SYT-interacting protein), a heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein identified as a nuclear receptor coactivator. It mediates transcriptional coactivation and RNA splicing effects in a promoter-preferential manner and is enhanced by thyroid hormone receptor-binding protein (TRBP). CoAA contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a TRBP-interacting domain. It stimulates transcription through its interactions with coactivators, such as TRBP and CREB-binding protein CBP/p300, via the TRBP-interacting domain and interaction with an RNA-containing complex, such as DNA-dependent protein kinase-poly(ADP-ribose) polymerase complexes, via the RRMs.
Statistics
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PSSM-Id: 410020
Aligned: 5 rows
Threshold Bit Score: 122.989
Created: 19-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q96PK6         1 MKIFVGNVDgadTTPEELAALFAPY--GTVMSCAVMKQFAFVHMREnAGALRAIEALHGhELRPGRALVVEMS 71  human
AAH77356       8 MKIFVGNIDe-rTSEGEVTALFERY--GAVLNCAVMRQYAFVHMRGtREATKAVEELNG-RELNGKKMLVELS 76  African clawed frog
AAI54223       7 VKLFVGNLAl-dTTQEELSAIFESY--GQVVSCSVLRQFAFVHLQGeGAAERAIRELNG-REFKGRNLVVEES 75  zebrafish
XP_003229966   5 VKVFVGNVPe-eTSQVELRDLFQAVepGAVLKVALMKQFAFVHLRDeAAADRAIAKLNG-QLVHGHRVVVEHS 75  green anole
XP_014339389   1 MKIFIGNLSs-kTREKDVSVLFEPY--GTVQSCAVLNQYAFVHMKEvEAGKRAVRELNG-TELHGNALVVEES 69  coelacanth
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