4QWN,2YU1


Conserved Protein Domain Family
CTD_KDM2A

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cd21784: CTD_KDM2A 
C-terminal domain found in Lysine-specific demethylase 2A
Lysine-specific demethylase 2A (KDM2A) is also called CXXC-type zinc finger protein 8, F-box and leucine-rich repeat protein 11 (FBXL11), F-box protein FBL7, F-box protein Lilina, F-box/LRR-repeat protein 11, JmjC domain-containing histone demethylation protein 1A (Jhdm1a), or [Histone-H3]-lysine-36 demethylase 1A. It is a ubiquitously expressed histone H3 lysine 36 (H3K36) demethylase that has been implicated in gene silencing, cell cycle, cell growth, and cancer development. It acts as a key negative regulator of gluconeogenic gene expression and plays a critical role in the invasiveness, proliferation, and anchorage-independent growth of non-small cell lung cancer (NSCLC) cells, as well as in the osteo/dentinogenic differentiation of Mesenchymal stem cells (MSCs). KDM2A regulates rRNA transcription in response to starvation and functions as a negative regulator of NF-kappaB. It is a heterochromatin-associated and HP1-interacting protein that promotes Heterochromatin Protein 1 (HP1) localization to chromatin. It is specifically recruited to CpG islands to define a unique chromatin architecture, which requires direct and specific interaction with linker DNA. It also functions as a H3K4 demethylase that regulates cell proliferation through p15 (INK4B) and p27 (Kip1) in stem cells from apical papilla (SCAPs). KDM2A belongs to the JmjC domain-containing histone demethylase family. KDM2A consists of two Jumonji domains (JmjN and JmjC), a CXXC zinc-finger domain, a plant homeodomain (PHD) finger, an F-box domain, followed by an antagonist of mitotic exit network protein 1 (AMN1) domain. This model corresponds to a small conserved region in KDM2A between the JmjC domain and the CXXC zinc-finger domain, which has been called the C-terminal domain by literature.
Statistics
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PSSM-Id: 412025
Aligned: 10 rows
Threshold Bit Score: 118.295
Created: 19-Mar-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4QWN_B          1 QVHLTHFELEGLRCLVDKLESLPlHKKCVPTGIEDEDALIADVKILLEELASSDPKLALTGVPIVQWP 68   house mouse
2YU1_A        384 QVHLTHFELEGLRCLVDKLESLPlHKKCVPTGIEDEDALIADVKILLEELANSDPKLALTGVPIVQWP 451  human
XP_015128110  494 RVHLTQFELEGLRCLVDKLESLPlHKKCVPTGIEDEDALIADVKLLLEEYANSDPKLALTGIPIVQWP 561  chicken
XP_014345868  149 WVHLTPFELEGLQTLLEKLESLPeHKRCVPSGIEDENALLTDVKNLLAEHANDDPELAFTGIPIIQWP 216  coelacanth
NP_001075161  394 KTHLTAFELEGLWRLVGKLESLPsNKKCVPSGIHNAAALLLDIRALLKEHANDIPKLSYTGRPIVRWP 461  zebrafish
Q9Y2K7        450 QVHLTHFELEGLRCLVDKLESLPlHKKCVPTGIEDEDALIADVKILLEELANSDPKLALTGVPIVQWP 517  human
Q5U263        471 SPFLTWFEVEGLRCLVLKLESLPpLKKCLPDGIHDPEALIFDIKRLLEDHAHDPPELALTGVPIIQWP 538  tropical clawed frog
NP_036440     450 QVHLTHFELEGLRCLVDKLESLPlHKKCVPTGIEDEDALIADVKILLEELANSDPKLALTGVPIVQWP 517  human
XP_018081070  472 SPYLTCFEVEGLRCLVMKLESLPpHKKCLPDGIHDPEALISDIKGLLEDHTHDPPELALTGVPIVHWP 539  African clawed frog
XP_005173200  401 KVHLAPFELEGLWALLHKLEDLPaHKKCVPAGIRNAPALLSDIRKLLEEHANDNPKLSYTGKPIVKWP 468  zebrafish
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