3CPW: The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI

PDB ID: 3CPWDownload
MMDB ID: 65619
PDB Deposition Date: 2008/4/1
Updated in MMDB: 2021/10
Experimental Method:
x-ray diffraction
Resolution: 2.7  Å
Source Organism:
Similar Structures:
Biological Unit for 3CPW: 31-meric; determined by software (PISA)
Molecular Components in 3CPW
Label Count Molecule
Proteins (28 molecules)
1
50S Ribosomal Protein L2P
(Gene symbol: RR_RS11185)
Molecule annotation
1
50S Ribosomal Protein L3P
(Gene symbol: rpl3p)
Molecule annotation
1
50S Ribosomal Protein L4P
(Gene symbol: rpl4p)
Molecule annotation
1
50S Ribosomal Protein L5P
(Gene symbol: RR_RS11135)
Molecule annotation
1
50S Ribosomal Protein L6P
(Gene symbol: RR_RS11120)
Molecule annotation
1
50S Ribosomal Protein L7ae
(Gene symbol: RR_RS04485)
Molecule annotation
1
50S Ribosomal Protein L10e
(Gene symbol: RR_RS10280)
Molecule annotation
1
50S Ribosomal Protein L10e
(Gene symbol: RR_RS14520)
Molecule annotation
1
50S Ribosomal Protein L13p
(Gene symbol: RR_RS04320)
Molecule annotation
1
50S Ribosomal Protein L14p
(Gene symbol: RR_RS11150)
Molecule annotation
1
50S Ribosomal Protein L15p
(Gene symbol: RR_RS11090)
Molecule annotation
1
50S Ribosomal Protein L15e
(Gene symbol: RR_RS13190)
Molecule annotation
1
50S Ribosomal Protein L18p
(Gene symbol: RR_RS11105)
Molecule annotation
1
50S Ribosomal Protein L18e
(Gene symbol: RR_RS04315)
Molecule annotation
1
50S Ribosomal Protein L19e
(Gene symbol: RR_RS11110)
Molecule annotation
1
50S Ribosomal Protein L21e
(Gene symbol: RR_RS05195)
Molecule annotation
1
50S Ribosomal Protein L22p
(Gene symbol: RR_RS11175)
Molecule annotation
1
50S Ribosomal Protein L23p
(Gene symbol: RR_RS11190)
Molecule annotation
1
50S Ribosomal Protein L24p
(Gene symbol: RR_RS11145)
Molecule annotation
1
50S Ribosomal Protein L24e
(Gene symbol: RR_RS04495)
Molecule annotation
1
50S Ribosomal Protein L29p
(Gene symbol: rpmC)
Molecule annotation
1
50S Ribosomal Protein L30p
(Gene symbol: rpmD)
Molecule annotation
1
50S Ribosomal Protein L31e
(Gene symbol: RR_RS17815)
Molecule annotation
1
50S Ribosomal Protein L32e
(Gene symbol: RR_RS11115)
Molecule annotation
1
50S Ribosomal Protein L37ae
(Gene symbol: RR_RS11475)
Molecule annotation
1
50S Ribosomal Protein L37e
Molecule annotation
1
50S Ribosomal Protein L39e
(Gene symbol: RR_RS17810)
Molecule annotation
1
50S Ribosomal Protein L44e
(Gene symbol: RR_RS19595)
Molecule annotation
Nucleotides(2 molecules)
1
23S Ribosomal RNA
Molecule annotation
1
5S Ribosomal RNA
Molecule annotation
Chemicals and Non-standard biopolymers (307 molecules)
4
1
5'-R(*CP*CP*AP*(PHE)*(ACA))-3'
1
1
N-{[(5S)-3-(3-fluoro-4-morpholin-4-ylphenyl)-2-oxo-1,3-oxazolidin-5-yl]methyl}acetamideN-{[(5S)-3-(3-fluoro-4-morpholin-4-ylphenyl)-2-oxo-1,3-oxazolidin-5-yl]methyl}acetamide
2
92
MAGNESIUM IONMAGNESIUM ION
3
2
POTASSIUM IONPOTASSIUM ION
4
75
SODIUM IONSODIUM ION
5
22
CHLORIDE IONCHLORIDE ION
6
108
STRONTIUM IONSTRONTIUM ION
7
5
CADMIUM IONCADMIUM ION
8
1
ACETYL GROUPACETYL GROUP
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303