NCBI
National Center for
Biotechnology Information
Search
3LGD:
Crystal Structure Of Human Adenosine Deaminase Growth Factor, Adenosine Deaminase Type 2 (Ada2)
Citation is unavailable
PDB ID:
3LGD
Download
MMDB ID:
80027
PDB Deposition Date:
2010/1/20
Updated in MMDB:
2011/09
Experimental Method:
x-ray diffraction
Resolution:
2 Å
Source Organism:
Homo sapiens
Similar Structures:
VAST+
Download sequence data
Biological Unit
Asymmetric Unit
Biological Unit for 3LGD: dimeric; determined by author and by software (PISA)
Molecular Graphic
?
3D view
full-featured 3D viewer
Download Cn3D
Interactions
?
A
A: ADENOSINE DEAMINASE CECR1
B
B: ADENOSINE DEAMINASE CECR1
1
NAG: N-acetyl-d-glucosamine
1
NAG: N-acetyl-d-glucosamine
1
NAG: N-acetyl-d-glucosamine
2
ZN: Zinc Ion
3
EDO: 1,2-ethanediol
1
NAG: N-acetyl-d-glucosamine
1
NAG: N-acetyl-d-glucosamine
1
NAG: N-acetyl-d-glucosamine
2
ZN: Zinc Ion
3
EDO: 1,2-ethanediol
4
4:
4
4:
Drag symbols to move
Double click symbols to explore molecules
Show chemicals
Protein
Nucleotide
Chemical
Download Stucture Data
?
Download
Format:
ASN.1 (Cn3D)
PDB
XML
JSON
PNG (image)
Data Set:
alpha-Carbons
Single 3D structure
* Mouse right-click to bring up context menu
Molecular Components in 3LGD
Label
Count
Molecule
Proteins (2 molecules)
A
B
2
Adenosine Deaminase Cecr1
(Gene symbol:
ADA2
)
2 Proteins
SS Diagram
3D Domains
1
100
200
300
400
508
508 residues, click to see VAST similar structures.
helix 6-18
helix 28-51
helix 71-78
helix 149-160
helix 174-188
helix 195-212
helix 236-254
helix 272-288
helix 344-351
helix 366-375
helix 383-390
helix 400-407
helix 426-434
helix 443-456
helix 461-482
strand 82-85
strand 107-113
strand 117-123
strand 136-139
strand 215-222
strand 225-229
strand 231-235
strand 258-268
strand 292-300
strand 327-331
strand 354-358
strand 377-382
strand 409-413
Domain 1 (1-96): click to see VAST similar structures
1
Domain 2 (97-191): click to see VAST similar structures
2
Domain 3 (192-313): click to see VAST similar structures
3
Domain 1 (314-508): click to see VAST similar structures
1
click domain graphic to toggle highlight of corresponding residues in 3D viewer
Chemicals and Non-standard biopolymers (12 molecules)
1
6
N-acetyl-d-glucosamine
2
2
Zinc Ion
3
2
1,2-ethanediol
4
2
Molecule information is not available.
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
You are here:
NCBI
>
Computational Biology Branch
>
Structure Group
> MMDB
Write to the Help Desk
HHS Vulnerability Disclosure