4D25: Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA and AMPPNP

PDB ID: 4D25Download
MMDB ID: 120752
PDB Deposition Date: 2014/5/7
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
Similar Structures:
Biological Unit for 4D25: dimeric; determined by author and by software (PISA)
Molecular Components in 4D25
Label Count Molecule
Protein (1 molecule)
1
Bmvlg Protein
Molecule annotation
Nucleotide(1 molecule)
1
5'-r(*up*gp*ap*cp*ap*up)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTERPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
1
MAGNESIUM IONMAGNESIUM ION
3
1
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303