4V1M: Architecture of the RNA polymerase II-Mediator core transcription initiation complex

PDB ID: 4V1MDownload
MMDB ID: 126744
PDB Deposition Date: 2014/9/29
Updated in MMDB: 2015/09
Experimental Method:
electron microscopy
Resolution: 6.6  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4V1M: tridecameric; determined by author
Molecular Components in 4V1M
Label Count Molecule
Proteins (10 molecules)
1
DNA-directed RNA Polymerase II Subunit Rpb1
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb2
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb3
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 1
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 2
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 3
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb9
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 5
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb11
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 4
Molecule annotation
Nucleotides(3 molecules)
1
5'-d(*ap*ap*gp*tp*ap*cp*tp*tp*gp*ap)-3'
Molecule annotation
1
5'-d(*cp*cp*ap*gp*gp*ap)-3'
Molecule annotation
1
5'-d(*tp*cp*ap*ap*gp*tp*ap*cp*tp*tp*tp*tp*tp*cp *cp*brup*gp*gp*tp*c)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
8
ZINC IONZINC ION
2
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303