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5ADY: Cryo-EM structures of the 50S ribosome subunit bound with HflX

PDB ID:	5ADY Download
MMDB ID:	133322
PDB Deposition Date:	2015/8/25
Updated in MMDB:	2015/12
Experimental Method:	electron microscopy
Resolution:	4.5 Å
Source Organism:	Escherichia coli K-12
Similar Structures:

Biological Unit for 5ADY: 34-meric; determined by author

Molecular Components in 5ADY
Label	Count	Molecule
Proteins (32 molecules)
0	1	50S Ribosomal Protein L32 (Gene symbol: rpmF)
1	1	50S Ribosomal Protein L33 (Gene symbol: rpmG)
2	1	50S Ribosomal Protein L34 (Gene symbol: rpmH)
3	1	50S Ribosomal Protein L35 (Gene symbol: rpmI)
4	1	50S Ribosomal Protein L36 (Gene symbol: rpmJ)
5	1	50S Ribosomal Protein L1 (Gene symbol: rplA)
6	1	Gtpase Hflx (Gene symbol: hflX)
7	1	50S Ribosomal Protein L10 (Gene symbol: rplJ)
C	1	50S Ribosomal Protein L2 (Gene symbol: rplB)
D	1	50S Ribosomal Protein L3 (Gene symbol: rplC)
E	1	50S Ribosomal Protein L4 (Gene symbol: rplD)
F	1	50S Ribosomal Protein L5 (Gene symbol: rplE)
G	1	50S Ribosomal Protein L6 (Gene symbol: rplF)
H	1	50S Ribosomal Protein L9 (Gene symbol: rplI)
I	1	50S Ribosomal Protein L11 (Gene symbol: rplK)
J	1	50S Ribosomal Protein L13 (Gene symbol: rplM)
K	1	50S Ribosomal Protein L14 (Gene symbol: rplN)
L	1	50S Ribosomal Protein L15 (Gene symbol: rplO)
M	1	50S Ribosomal Protein L16 (Gene symbol: rplP)
N	1	50S Ribosomal Protein L17 (Gene symbol: rplQ)
O	1	50S Ribosomal Protein L18 (Gene symbol: rplR)
P	1	50S Ribosomal Protein L19 (Gene symbol: rplS)
Q	1	50S Ribosomal Protein L20 (Gene symbol: rplT)
R	1	50S Ribosomal Protein L21 (Gene symbol: rplU)
S	1	50S Ribosomal Protein L22 (Gene symbol: rplV)
T	1	50S Ribosomal Protein L23 (Gene symbol: rplW)
U	1	50S Ribosomal Protein L24 (Gene symbol: rplX)
V	1	50S Ribosomal Protein L25 (Gene symbol: rplY)
W	1	50S Ribosomal Protein L27 (Gene symbol: rpmA)
X	1	50S Ribosomal Protein L28 (Gene symbol: rpmB)
Y	1	50S Ribosomal Protein L29 (Gene symbol: rpmC)
Z	1	50S Ribosomal Protein L30 (Gene symbol: rpmD)
Nucleotides(2 molecules)
A	1	5S rRNA
B	1	23S rRNA
Chemicals and Non-standard biopolymers (2 molecules)
1	1	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2	1	MAGNESIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303