5CL8: Alkylpurine DNA glycosylase AlkD bound to DNA containing an abasic site and a free nucleobase (100% product at 144 hours)

PDB ID: 5CL8Download
MMDB ID: 133723
PDB Deposition Date: 2015/7/16
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 1.38  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5CL8: trimeric; determined by author and by software (PISA)
Molecular Components in 5CL8
Label Count Molecule
Protein (1 molecule)
1
Alkd
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*cp*cp*cp*gp*ap*(orp)p*ap*gp*tp*cp*cp*g)-3')
Molecule annotation
1
DNA (5'-d(*cp*gp*gp*ap*cp*tp*tp*tp*cp*gp*gp*g)-3')
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
7-methyl-3H-imidazo[4,5-c]pyridin-4-amine7-methyl-3H-imidazo[4,5-c]pyridin-4-amine
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303