5XF3: Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (R,R-configuration)

PDB ID: 5XF3Download
MMDB ID: 155587
PDB Deposition Date: 2017/4/7
Updated in MMDB: 2017/12
Experimental Method:
x-ray diffraction
Resolution: 2.6  Å
Source Organism:
Similar Structures:
Biological Unit for 5XF3: decameric; determined by author and by software (PISA)
Molecular Components in 5XF3
Label Count Molecule
Proteins (8 molecules)
2
Histone H3.1
(Gene symbol: H3C1)
Molecule annotation
2
Histone H4
(Gene symbol: H4C9)
Molecule annotation
2
Histone H2A Type 1-b/e
(Gene symbol: H2AC8)
Molecule annotation
2
Histone H2B Type 1-J
(Gene symbol: H2BC11)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (145-mer)
Molecule annotation
1
DNA (145-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
2
[ethane6-3-(p-tolyl)propanoic acid]Ru(1,3,5-triaza-7-phosphaadamantane)Cl2[ethane6-3-(p-tolyl)propanoic acid]Ru(1,3,5-triaza-7-phosphaadamantane)Cl2
3
1
(1R,2R)-1,2-diphenylethane-1,2-diamine(1R,2R)-1,2-diphenylethane-1,2-diamine
4
1
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303