6D6R: Human nuclear exosome-MTR4 RNA complex - composite map after focused reconstruction

PDB ID: 6D6RDownload
MMDB ID: 163630
PDB Deposition Date: 2018/4/22
Updated in MMDB: 2019/11
Experimental Method:
electron microscopy
Resolution: 3.45  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6D6R: 15-meric; determined by author
Molecular Components in 6D6R
Label Count Molecule
Proteins (13 molecules)
1
Exosome Complex Component Rrp45
Molecule annotation
1
Exosome Complex Component Rrp41
Molecule annotation
1
Exosome Complex Component Rrp43
Molecule annotation
1
Exosome Complex Component Rrp46
Molecule annotation
1
Exosome Complex Component Rrp42
Molecule annotation
1
Exosome Complex Component Mtr3
Molecule annotation
1
Exosome Complex Component Rrp40
Molecule annotation
1
Exosome Complex Component Rrp4
Molecule annotation
1
Exosome Complex Component Csl4
Molecule annotation
1
Exosome Component 10
Molecule annotation
1
Exosome Complex Exonuclease Rrp44
Molecule annotation
1
M-phase Phosphoprotein 6
Molecule annotation
1
Exosome RNA Helicase Mtr4
Molecule annotation
Nucleotide(1 molecule)
1
RNA (5'-r(*ap*gp*cp*ap*cp*cp*gp*up*ap*ap*ap*gp*ap*cp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
O
1
DNA/RNA (62-MER)
1
1
ZINC IONZINC ION
2
1
MAGNESIUM IONMAGNESIUM ION
3
1
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTERPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303