6DPO: Crystal Structure of Bacillus Halodurans Ribonuclease H1 E188A in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 360 s at 21 C

PDB ID: 6DPODownload
MMDB ID: 165758
PDB Deposition Date: 2018/6/9
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.45  Å
Source Organism:
Halalkalibacterium halodurans▼
Similar Structures:
Biological Unit for 6DPO: tetrameric; determined by author and by software (PISA)
Molecular Components in 6DPO
Label Count Molecule
Protein (1 molecule)
1
Ribonuclease H
Molecule annotation
Nucleotides(3 molecules)
1
5'-r(*ap*cp*ap*u)-3' Portion of Cleaved RNA 5'-r(*ap*cp*ap*up*cp*g)-3'
Molecule annotation
1
5'-r(p*cp*g)-3' Portion of Cleaved RNA (5'-r(*ap*cp*ap*up*cp*g)-3')
Molecule annotation
1
DNA (5'-d(*cp*gp*ap*tp*gp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
3
MAGNESIUM IONMAGNESIUM ION
2
4
IODIDE IONIODIDE ION
3
5
GLYCEROLGLYCEROL
4
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
POTASSIUM IONPOTASSIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303