National Center for
Biotechnology Information

6FTG: Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

PDB ID:

6FTG Download

MMDB ID:

171522

PDB Deposition Date:

2018/2/22

Updated in MMDB:

2022/11

Experimental Method:

electron microscopy

Resolution:

9.1 Å

Source Organism:

Oryctolagus cuniculus▼

Taxonomy	Molecule
Oryctolagus cuniculus	A, B, C, D, E, F, G, H, I, J, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i , j, k, l, m, n, o, p, r, s, t, u, v, w
Canis lupus familiaris	x, y, z, 1, 2, 3, 4, 5, 6, 7, 8

Similar Structures:

Biological Unit for 6FTG: 58-meric; determined by author

Molecular Components in 6FTG
Label	Count	Molecule
Proteins (55 molecules)
A	1	UL2
B	1	UL3
C	1	Ribosomal Protein L4
D	1	60S Ribosomal Protein L5
E	1	60S Ribosomal Protein L6
F	1	Ul30
G	1	EL8
H	1	UL6
I	1	Ribosomal Protein L10 (Predicted)
J	1	Ribosomal Protein L11
L	1	El13
M	1	Ribosomal Protein L14
N	1	Ribosomal Protein L15
O	1	Ul13
P	1	Ul22
Q	1	Ul14
R	1	El19
S	1	El20
T	1	El21
U	1	El22
V	1	Ul14
W	1	Ribosomal Protein L24
X	1	Ul23
Y	1	Ribosomal Protein L26
Z	1	60S Ribosomal Protein L27
a	1	Ul15
b	1	60S Ribosomal Protein L29
c	1	El30
d	1	El31
e	1	El32
f	1	El33
g	1	El34
h	1	El29
i	1	60S Ribosomal Protein L36
j	1	Ribosomal Protein L37
k	1	El38
l	1	El39
m	1	El40
n	1	60S Ribosomal Protein L41
o	1	El42
p	1	Ribosomal Protein L37a
r	1	El28
s	1	60S Acidic Ribosomal Protein P0
t	1	Ribosomal Protein L12
x	1	Protein Transport Protein Sec61 Subunit Alpha Isoform 1
y	1	Protein Transport Protein Sec61 Subunit Gamma
z	1	Protein Transport Protein Sec61 Subunit Beta
1	1	Dolichyl-diphosphooligosaccharide--protein Glycosyltransferase Subunit 1,rpn1
2	1	Tmem258
3	1	Oligosaccharyltransferase Complex Subunit Ostc
4	1	Ost4
5	1	Dolichyl-diphosphooligosaccharide--protein Glycosyltransferase Subunit Stt3a
6	1	Dad1
7	1	Ost48
8	1	Rpn2
Nucleotides(3 molecules)
u	1	28S Ribosomal RNA
v	1	5S Ribosomal RNA
w	1	5.8s Ribosomal RNA
Chemicals and Non-standard biopolymers (173 molecules)
1	2	2-acetamido-2-deoxy-beta-D-glucopyranose (Link to PubChem not yet available)
2	1	beta-D-mannopyranose (Link to PubChem not yet available)
3	5	alpha-D-mannopyranose (Link to PubChem not yet available)
4	159	MAGNESIUM ION (Link to PubChem not yet available)
5	5	ZINC ION (Link to PubChem not yet available)
6	1	[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic acid (Link to PubChem not yet available)

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303