National Center for
Biotechnology Information

6FXC: The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

PDB ID:

6FXC Download

MMDB ID:

171531

PDB Deposition Date:

2018/3/8

Updated in MMDB:

2024/10

Experimental Method:

electron microscopy

Resolution:

6.76 Å

Source Organism:

Staphylococcus aureus RF122▼

Taxonomy	Molecule
Staphylococcus aureus RF122	Ab, Ac, Ad, Ae, Af, Ah, Aj, Ak, Am, An, Ao, Ap, Aq, At, Au, Av, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AN, AO, AP, AQ, AR, AS, AV, AW, AX, AY, A2, A3, Bb, Bc, Bd, Be, Bf, Bh, Bj, Bk, Bm, Bn, Bo, Bp, Bq, Bt, Bu, Bv, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BN, BO, BP, BQ, BR, BS, BV, BW, BX, BY, B2, B3
Staphylococcus aureus	Aa, Ag, Ai, Al, Ar, As, AA, AB, AM, AT, AU, AZ, A1, A4, Ba, Bg, Bi, Bl, Br, Bs, BA, BB, BM, BT, BU, BZ, B1, B4

Similar Structures:

Molecular Components in 6FXC
Label	Count	Molecule
Proteins (98 molecules)
Ab Bb	2	30S Ribosomal Protein S2
Ac Bc	2	30S Ribosomal Protein S3
Ad Bd	2	30S Ribosomal Protein S4
Ae Be	2	30S Ribosomal Protein S5
Af Bf	2	30S Ribosomal Protein S6
Ag Bg	2	30S Ribosomal Protein S7
Ah Bh	2	30S Ribosomal Protein S8
Ai Bi	2	30S Ribosomal Protein S9
Aj Bj	2	30S Ribosomal Protein S10
Ak Bk	2	30S Ribosomal Protein S11
Al Bl	2	30S Ribosomal Protein S12
Am Bm	2	30S Ribosomal Protein S13
An Bn	2	30S Ribosomal Protein S14 Type Z
Ao Bo	2	30S Ribosomal Protein S15
Ap Bp	2	30S Ribosomal Protein S16
Aq Bq	2	30S Ribosomal Protein S17
Ar Br	2	30S Ribosomal Protein S18
As Bs	2	30S Ribosomal Protein S19
At Bt	2	30S Ribosomal Protein S20
Au Bu	2	30S Ribosomal Protein S21
Av Bv	2	Ribosome Hibernation Promotion Factor
AC BC	2	50S Ribosomal Protein L2
AD BD	2	50S Ribosomal Protein L3
AE BE	2	50S Ribosomal Protein L4
AF BF	2	50S Ribosomal Protein L5
AG BG	2	50S Ribosomal Protein L6
AH BH	2	50S Ribosomal Protein L13
AI BI	2	50S Ribosomal Protein L14
AJ BJ	2	50S Ribosomal Protein L15
AK BK	2	50S Ribosomal Protein L16
AL BL	2	50S Ribosomal Protein L17
AM BM	2	50S Ribosomal Protein L18
AN BN	2	50S Ribosomal Protein L19
AO BO	2	50S Ribosomal Protein L20
AP BP	2	50S Ribosomal Protein L21
AQ BQ	2	50S Ribosomal Protein L22
AR BR	2	50S Ribosomal Protein L23
AS BS	2	50S Ribosomal Protein L24
AT BT	2	50S Ribosomal Protein L25
AU BU	2	50S Ribosomal Protein L27
AV BV	2	50S Ribosomal Protein L28
AW BW	2	50S Ribosomal Protein L29
AX BX	2	50S Ribosomal Protein L30
AY BY	2	50S Ribosomal Protein L31 Type B
AZ BZ	2	50S Ribosomal Protein L32
A1 B1	2	50S Ribosomal Protein L33
A2 B2	2	50S Ribosomal Protein L34
A3 B3	2	50S Ribosomal Protein L35
A4 B4	2	50S Ribosomal Protein L36
Nucleotides(6 molecules)
Aa Ba	2	16S Ribosomal RNA
AA BA	2	23S Ribosomal RNA
AB BB	2	5S Ribosomal RNA

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303