6GDY: Crystal structure of 2OG oxygenase JMJD6 (aa 1-343) in complex with Fe(II) and 2OG

PDB ID: 6GDYDownload
MMDB ID: 173844
PDB Deposition Date: 2018/4/24
Updated in MMDB: 2019/10
Experimental Method:
x-ray diffraction
Resolution: 2.04  Å
Source Organism:
Similar Structures:
Biological Unit for 6GDY: dimeric; determined by author and by software (PISA)
Molecular Components in 6GDY
Label Count Molecule
Proteins (2 molecules)
2
Bifunctional Arginine Demethylase and Lysyl-hydroxylase Jmjd6
(Gene symbol: JMJD6)
Molecule annotation
Chemicals and Non-standard biopolymers (20 molecules)
1
2
FE (III) IONFE (III) ION
2
2
2-OXOGLUTARIC ACID2-OXOGLUTARIC ACID
3
1
SODIUM IONSODIUM ION
4
10
PHOSPHATE IONPHOSPHATE ION
5
2
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
6
3
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303