National Center for
Biotechnology Information

6GML: Structure of paused transcription complex Pol II-DSIF-NELF

PDB ID:

MMDB ID:

166435

PDB Deposition Date:

2018/5/27

Updated in MMDB:

2019/12

Experimental Method:

electron microscopy

Resolution:

3.2 Å

Source Organism:

Human immunodeficiency virus 1▼

Taxonomy	Molecule
Human immunodeficiency virus 1	N, P, T
Sus scrofa	A, B, C, E, F, H, I, J, K, L, D, G
Homo sapiens	U, V, W, X, Y, Z

Similar Structures:

Biological Unit for 6GML: 21-meric; determined by author

Molecular Components in 6GML
Label	Count	Molecule
Proteins (18 molecules)
A	1	DNA-directed RNA Polymerase Subunit
B	1	DNA-directed RNA Polymerase Subunit Beta
C	1	RNA Polymerase II Subunit C
E	1	RNA Polymerase II Subunit E
F	1	RNA Polymerase II Subunit F
H	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
I	1	DNA-directed RNA Polymerase II Subunit Rpb9
J	1	Uncharacterized Protein
K	1	Uncharacterized Protein
L	1	Uncharacterized Protein
U	1	Negative Elongation Factor a
V	1	Negative Elongation Factor B,negative Elongation Factor B
W	1	Negative Elongation Factor C/D
X	1	Negative Elongation Factor E,negative Elongation Factor E
Y	1	Transcription Elongation Factor Spt4
Z	1	Transcription Elongation Factor Spt5
D	1	RNA Polymerase II Subunit D
G	1	RNA Polymerase II Subunit G
Nucleotides(3 molecules)
N	1	Non-template DNA
P	1	TAR RNA
T	1	Template DNA
Chemicals and Non-standard biopolymers (10 molecules)
1	1	MAGNESIUM ION
2	9	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB