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6GYL:
Structure of a yeast closed complex with distorted DNA (core CCdist)
PDB ID:
6GYL
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MMDB ID:
169332
PDB Deposition Date:
2018/6/30
Updated in MMDB:
2019/12
Experimental Method:
electron microscopy
Resolution:
4.8 Å
Source Organism:
Saccharomyces cerevisiae S288C
Similar Structures:
VAST+
Download sequence data
Biological Unit for 6GYL: 22-meric; determined by author
Molecular Components in 6GYL
Label
Count
Molecule
Proteins (20 molecules)
A
1
DNA-directed RNA Polymerase II Subunit Rpb1
(Gene symbol:
RPO21
)
B
1
DNA-directed RNA Polymerase II Subunit Rpb2
(Gene symbol:
RPB2
)
C
1
DNA-directed RNA Polymerase II Subunit Rpb3
(Gene symbol:
RPB3
)
D
1
DNA-directed RNA Polymerase II Subunit Rpb4
(Gene symbol:
RPB4
)
E
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
(Gene symbol:
RPB5
)
F
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
(Gene symbol:
RPO26
)
G
1
DNA-directed RNA Polymerase II Subunit Rpb7
(Gene symbol:
RPB7
)
H
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
(Gene symbol:
RPB8
)
I
1
DNA-directed RNA Polymerase II Subunit Rpb9
(Gene symbol:
RPB9
)
J
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
(Gene symbol:
RPB10
)
K
1
DNA-directed RNA Polymerase II Subunit Rpb11
(Gene symbol:
RPB11
)
L
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
(Gene symbol:
RPC10
)
M
1
Transcription Initiation Factor IIB
(Gene symbol:
SUA7
)
O
1
Tata-box-binding Protein
(Gene symbol:
SPT15
)
Q
1
Transcription Initiation Factor IIF Subunit Alpha
(Gene symbol:
TFG1
)
R
1
Transcription Initiation Factor IIF Subunit Beta
(Gene symbol:
TFG2
)
U
1
Transcription Initiation Factor IIA Large Subunit,transcription Initiation Factor IIA Large Subunit
(Gene symbol:
TOA1
)
V
1
Transcription Initiation Factor IIA Subunit 2
(Gene symbol:
TOA2
)
W
1
Transcription Initiation Factor IIE Subunit Alpha,tfa1,tfa1
(Gene symbol:
TFA1
)
X
1
Transcription Initiation Factor IIE Subunit Beta
(Gene symbol:
TFA2
)
Nucleotides(2 molecules)
N
1
Gat1 Promoter DNA
T
1
Gat1 Promoter DNA
Chemicals and Non-standard biopolymers (11 molecules)
1
10
ZINC ION
2
1
MAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303