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6HCF: Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

PDB ID:

MMDB ID:

171565

PDB Deposition Date:

2018/8/14

Updated in MMDB:

2024/05

Experimental Method:

electron microscopy

Resolution:

3.9 Å

Source Organism:

Oryctolagus cuniculus▼

Taxonomy	Molecule
Oryctolagus cuniculus	A1, B1, C1, D1, E1, F1, G1, H1, I1, J1, K1, L1, M1, N1, O1, P1, Q1, R1, S1, T1, U1, V1, W1, X1, Y1, Z1, a1, b1, c1, d1, e1, f1, g1, h1, k1, 52, 72, 82, A3, B3, C3, E3, F3, H3, L3, M3, N3, O3, P3, Q3, R3, S3, T3, U3, V3, W3, X3, Y3, Z3, a3, b3, c3, d3, e3, f3, g3, h3, i3, j3, k3, l3, m3, n3, o3, p3, r3, s3, t3, 23, w3, J3, G3, D3, I3, 1, u3
Homo sapiens	j1

Similar Structures:

Biological Unit for 6HCF: 87-meric; determined by author

Molecular Components in 6HCF
Label	Count	Molecule
Proteins (81 molecules)
B1	1	US2
C1	1	40S Ribosomal Protein S3A
D1	1	US5
E1	1	US3
F1	1	ES4
G1	1	Ribosomal Protein S5
H1	1	40S Ribosomal Protein S6
I1	1	40S Ribosomal Protein S7
J1	1	ES8
K1	1	Ribosomal Protein S9 (Predicted)
L1	1	Es10
M1	1	Ribosomal Protein S11
N1	1	40S Ribosomal Protein S12
O1	1	Us15
P1	1	Us11
Q1	1	Us19
R1	1	Ribosomal Protein S16
S1	1	Es17
T1	1	Us13
U1	1	Es19
V1	1	Us10
W1	1	Es21
X1	1	Ribosomal Protein S15a
Y1	1	Us12
Z1	1	Es24
a1	1	Es25
b1	1	Es26
c1	1	40S Ribosomal Protein S27
d1	1	Ribosomal Protein S28
e1	1	Us14
f1	1	40S Ribosomal Protein S30
g1	1	Ribosomal Protein S27a
h1	1	Rack1
j1	1	Erf1(aaq)
k1	1	ATP Binding Cassette Subfamily E Member 1
A3	1	Ribosomal Protein L8
B3	1	UL3
C3	1	UL4
E3	1	60S Ribosomal Protein L6
F3	1	Ul30
H3	1	UL6
L3	1	El13
M3	1	Ribosomal Protein L14
N3	1	Ribosomal Protein L15
O3	1	Ul13
P3	1	Ul22
Q3	1	El18
R3	1	El19
S3	1	El20
T3	1	El21
U3	1	El22
V3	1	Ribosomal Protein L23
W3	1	El24
X3	1	Ul23
Y3	1	Ribosomal Protein L26
Z3	1	60S Ribosomal Protein L27
a3	1	Ul15
b3	1	El29
c3	1	El30
d3	1	El31
e3	1	El32
f3	1	El33
g3	1	El34
h3	1	Ul29
i3	1	60S Ribosomal Protein L36
j3	1	Ribosomal Protein L37
k3	1	El38
l3	1	El39
m3	1	El40
n3	1	El41
o3	1	El42
p3	1	El43
r3	1	El28
s3	1	Ul10
t3	1	Ribosomal Protein L12
J3	1	Ribosomal Protein L11
G3	1	EL8
D3	1	60S Ribosomal Protein L5
I3	1	60S Ribosomal Protein L10
1	1	Nascent Chain
u3	1	UL1
Nucleotides(6 molecules)
A1	1	18S Ribosomal RNA
52	1	28S Ribosomal RNA
72	1	5S Ribosomal RNA
82	1	5.8s Ribosomal RNA
23	1	P-site tRNA
w3	1	mRNA
Chemicals and Non-standard biopolymers (310 molecules)
1	300	MAGNESIUM ION
2	8	ZINC ION
3	2	IRON/SULFUR CLUSTER

* Click molecule labels to explore molecular sequence information.

Citing MMDB