6HCJ: Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

PDB ID: 6HCJDownload
MMDB ID: 171566
PDB Deposition Date: 2018/8/15
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3.8  Å
Source Organism:
Similar Structures:
Biological Unit for 6HCJ: 85-meric; determined by author
Molecular Components in 6HCJ
Label Count Molecule
Proteins (78 molecules)
1
US2
Molecule annotation
1
40S Ribosomal Protein S3A
Molecule annotation
1
US5
Molecule annotation
1
US3
Molecule annotation
1
ES4
Molecule annotation
1
Ribosomal Protein S5
Molecule annotation
1
40S Ribosomal Protein S6
Molecule annotation
1
40S Ribosomal Protein S7
Molecule annotation
1
ES8
Molecule annotation
1
Ribosomal Protein S9 (Predicted)
Molecule annotation
1
Es10
Molecule annotation
1
Ribosomal Protein S11
Molecule annotation
1
40S Ribosomal Protein S12
Molecule annotation
1
Us15
Molecule annotation
1
Us11
Molecule annotation
1
Us19
Molecule annotation
1
Ribosomal Protein S16
Molecule annotation
1
Es17
Molecule annotation
1
Us13
Molecule annotation
1
Es19
Molecule annotation
1
Us10
Molecule annotation
1
Es21
Molecule annotation
1
Ribosomal Protein S15a
Molecule annotation
1
Us12
Molecule annotation
1
Es24
Molecule annotation
1
Es25
Molecule annotation
1
Es26
Molecule annotation
1
40S Ribosomal Protein S27
Molecule annotation
1
Ribosomal Protein S28
Molecule annotation
1
Us14
Molecule annotation
1
40S Ribosomal Protein S30
Molecule annotation
1
Ribosomal Protein S27a
Molecule annotation
1
Rack1
Molecule annotation
1
Ribosomal Protein L8
Molecule annotation
1
UL3
Molecule annotation
1
UL4
Molecule annotation
1
60S Ribosomal Protein L5
Molecule annotation
1
60S Ribosomal Protein L6
Molecule annotation
1
Ul30
Molecule annotation
1
EL8
Molecule annotation
1
UL6
Molecule annotation
1
60S Ribosomal Protein L10
Molecule annotation
1
Ribosomal Protein L11
Molecule annotation
1
El13
Molecule annotation
1
Ribosomal Protein L14
Molecule annotation
1
Ribosomal Protein L15
Molecule annotation
1
Ul13
Molecule annotation
1
Ul22
Molecule annotation
1
El18
Molecule annotation
1
El19
Molecule annotation
1
El20
Molecule annotation
1
El21
Molecule annotation
1
El22
Molecule annotation
1
Ribosomal Protein L23
Molecule annotation
1
Ul23
Molecule annotation
1
Ribosomal Protein L26
Molecule annotation
1
60S Ribosomal Protein L27
Molecule annotation
1
Ul15
Molecule annotation
1
El29
Molecule annotation
1
El30
Molecule annotation
1
El31
Molecule annotation
1
El32
Molecule annotation
1
El33
Molecule annotation
1
El34
Molecule annotation
1
Ul29
Molecule annotation
1
60S Ribosomal Protein L36
Molecule annotation
1
Ribosomal Protein L37
Molecule annotation
1
El38
Molecule annotation
1
El39
Molecule annotation
1
El40
Molecule annotation
1
El41
Molecule annotation
1
El42
Molecule annotation
1
El43
Molecule annotation
1
El28
Molecule annotation
1
Ul10
Molecule annotation
1
Ribosomal Protein L12
Molecule annotation
1
UL1
Molecule annotation
1
Nascent Chain
Molecule annotation
Nucleotides(7 molecules)
1
28S Ribosomal RNA
Molecule annotation
1
5S Ribosomal RNA
Molecule annotation
1
5.8s Ribosomal RNA
Molecule annotation
1
18S Ribosomal RNA
Molecule annotation
1
A/P RNA
Molecule annotation
1
mRNA
Molecule annotation
1
P/E tRNA
Molecule annotation
Chemicals and Non-standard biopolymers (308 molecules)
1
300
MAGNESIUM IONMAGNESIUM ION
2
8
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303