6IQ4: Nucleosome core particle cross-linked with a hetero-binuclear molecule possessing RAPTA and gold(I) 4-(diphenylphosphino)benzoic acid groups

PDB ID: 6IQ4Download
MMDB ID: 180828
PDB Deposition Date: 2018/11/6
Updated in MMDB: 2019/11
Experimental Method:
x-ray diffraction
Resolution: 2.25  Å
Source Organism:
Similar Structures:
Biological Unit for 6IQ4: decameric; determined by author and by software (PISA)
Molecular Components in 6IQ4
Label Count Molecule
Proteins (8 molecules)
2
Histone H3.1
(Gene symbol: H3C1)
Molecule annotation
1
Histone H4
(Gene symbol: H4C9)
Molecule annotation
2
Histone H2A Type 1-b/e
(Gene symbol: H2AC8)
Molecule annotation
2
Histone H2B Type 1-J
(Gene symbol: H2BC11)
Molecule annotation
1
Histone H4
(Gene symbol: H4C9)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (145-mer)
Molecule annotation
1
DNA (145-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
GOLD IONGOLD ION
2
1
4-diphenylphosphanylbenzoic acid4-diphenylphosphanylbenzoic acid
3
4
MAGNESIUM IONMAGNESIUM ION
4
1
[Ru(eta(6)-p-cymene)Cl-2(pta)[Ru(eta(6)-p-cymene)Cl-2(pta)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303