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Biotechnology Information

6J50: RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome (tilted conformation)

PDB ID:

MMDB ID:

172480

PDB Deposition Date:

2019/1/10

Updated in MMDB:

2022/11

Experimental Method:

electron microscopy

Resolution:

4.7 Å

Source Organism:

Komagataella phaffii CBS 7435▼

Similar Structures:

Biological Unit for 6J50: 27-meric; determined by author

Molecular Components in 6J50
Label	Count	Molecule
Proteins (22 molecules)
A	1	DNA-directed RNA Polymerase Subunit
B	1	DNA-directed RNA Polymerase Subunit Beta
C	1	RNA Polymerase II Third Largest Subunit B44, Part of Central Core
D	1	RNA Polymerase II Subunit B32
E	1	RNA Polymerase Subunit Abc27, Common to RNA Polymerases I, II, and III
F	1	RNA Polymerase Subunit Abc23, Common to RNA Polymerases I, II, and III
G	1	RNA Polymerase II Subunit
H	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
I	1	DNA-directed RNA Polymerase Subunit
J	1	RNA Polymerase Subunit Abc10-beta, Common to RNA Polymerases I, II, and III
K	1	RNA Polymerase II Subunit B12.5
L	1	RNA Polymerase Subunit Abc10-alpha
V	1	Transcription Elongation Factor Spt4
W	1	Protein That Forms a Complex With Spt4p
a e	2	Histone H3.3
b f	2	Histone H4
c g	2	Histone H2A Type 1-b/e
d h	2	Histone H2B Type 1-J
Nucleotides(5 molecules)
P	1	RNA (5'-r(pgpcpcpupgpgpupgpupcpupupgpgpgpu)-3')
T	1	DNA (198-mer)
N	1	DNA (198-mer)
0	1	DNA (41-mer)
1	1	DNA (41-mer)
Chemicals and Non-standard biopolymers (10 molecules)
1	9	ZINC ION
2	1	MAGNESIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB